back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SiaT and St8sia3

DIOPT Version :9

Sequence 1:	NP_523853.1	Gene:	SiaT / 37950	FlyBaseID:	FBgn0035050	Length:	474	Species:	Drosophila melanogaster
Sequence 2:	NP_033208.2	Gene:	St8sia3 / 20451	MGIID:	106019	Length:	380	Species:	Mus musculus

Alignment Length:	367	Identity:	80/367 - (21%)
Similarity:	123/367 - (33%)	Gaps:	122/367 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly   134 SPKLYLCH----------------------------DKHSELCHNKTQQFRQR--------IVRA 162
            :|::|:.|                            :|.|:...|:|....||        :::.
Mouse    49 APRMYMFHAGFRSQFALKFLDQSFVPITNSLTHELQEKPSKWTFNRTAFLHQRQEILQHVDVIKN 113

  Fly   163 FEKAMVESVNESQANHYNV-DYKPVFGDSFEEQYYPSTCLVMEAGVRVLRRKDAPFNKLPFGRLF 226
            |.... .||...|..||:. .:|.||..|..                             |..|.
Mouse   114 FSLTK-SSVRIGQLMHYDYSSHKYVFSISNN-----------------------------FRSLL 148

  Fly   227 PRQKLFRNVKDIKTCAIVSSAGSLAGSKLGRFIDTHDIVMRFNHAPTQGHEVDVGSKTTIRVVNS 291
            |......| |....||:|.::|.|.||:.|:.||..|.|.|.|.|||:....|||.||.:...|.
Mouse   149 PDVSPIMN-KRYNVCAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFHKDVGRKTNLTTFNP 212

  Fly   292 QVVTKPEFDFTRAPIFRNVTIAAWDPGKYNGTLED------WL------TSAD-----YDLFSNY 339
            .::.|          :.|..:...|...:..:|:.      |:      |||.     .|.|..:
Mouse   213 SILEK----------YYNNLLTIQDRNNFFLSLKKLDGAILWIPAFFFHTSATVTRTLVDFFVEH 267

  Fly   340 ELYRRRYPKSRAFLIDPHSVW----RLWQSLQMFAGNRPISKNPPSSGFIGLALLLPHCPQVDF- 399
            .      .:.:..|..|.::.    |.|:       |:.:|....|:|.:...|....|.::..
Mouse   268 R------GQLKVQLAWPGNIMQHVNRYWK-------NKHLSPKRLSTGILMYTLASAICEEIHLY 319

  Fly   400 ----VEYVPSTRLNGRCHYYSKEMNSACTFGSW---HPLAAE 434
                ..:.|:||.:...|||.|:.....|  .|   |.|.||
Mouse   320 GFWPFGFDPNTREDLPYHYYDKKGTKFTT--KWQESHQLPAE 359

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.