DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp1

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001025501.1 Gene:mmp1 / 594916 XenbaseID:XB-GENE-485009 Length:467 Species:Xenopus tropicalis


Alignment Length:490 Identity:182/490 - (37%)
Similarity:249/490 - (50%) Gaps:51/490 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 MAAA-----QSAPVSTTTQ-AEIYLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNIT 77
            :|||     |.||..|:.: ||.||.:| |...:...|... ..:.|.:...:::.|.|.||.:|
 Frog    14 LAAAFPTDKQDAPTGTSEEMAENYLKKF-YSLGTEGGPVGR-KKNNRPFTEKLQQMQKFFGLKVT 76

  Fly    78 GELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIG 142
            |.||::|:::|..|||||.| ||...:..|     .|.|:..:|||:|..:...|.:.||:|.|.
 Frog    77 GILDSKTIEVMQKPRCGVYD-VGQYSTVPK-----SSAWQKTDLTYRIINFTPDLPQADVEAAIQ 135

  Fly   143 RAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP--VFGGDAHFDDA 205
            |||.|||:.|.|||||..:....|||.|...:|.|...|||.||.|||||.|  ..|||||||:.
 Frog   136 RAFKVWSDVTPLTFTRIYNEVSDIEISFSAGDHKDNSPFDGPGGILAHAFQPGNGIGGDAHFDED 200

  Fly   206 ELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEP-VFKLDEDDKAAIQSLYGR 269
            |.||..| :..|||.|||||||||||||||....|||.|.|...:| .|:|.:||..|||.|||:
 Frog   201 ESWTKTS-QLYNLFLVAAHEFGHSLGLSHSTDPGALMYPSYSSTDPNAFQLPQDDINAIQYLYGK 264

  Fly   270 KTNQLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEE 334
            .:|.::||.               |...:||..:.|.....:.:||...|. :::.........|
 Frog   265 SSNPVQPTG---------------PTTPTICDPNVVFDAVTTLRGELIFFL-NRFIWRKHPQASE 313

  Fly   335 GYPQLISKGWPGLPGNIDAAFTYKNGKT---YFFKGTQYWRYQGRQMDGVYPKEI-SEGFTGIPD 395
            .....:...||.||.:||||  |:|..|   ..|||.:|....|..:...||:.| |.||.....
 Frog   314 AELMFVQTFWPSLPNDIDAA--YENPITEQILVFKGAKYTALNGFDVLPGYPRNIYSLGFPKTVK 376

  Fly   396 HLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPI-SNWEGVPNNLDAALKYTNGYTYF 459
            .:|||:......|.|||..:|:|.:|..|:...| .:||.| .::.|:|..::||| |..|..||
 Frog   377 RIDAAVHIEHLAKTYFFVANKYWSYDEDKQQMDK-GFPKLIRDDFPGIPEKINAAL-YYRGRLYF 439

  Fly   460 FKGDKYYRFH-DARFAVDSATPPFPRPTAHWWFGC 493
            |.|...:.:: :.:..|...       .::.|.||
 Frog   440 FIGRVQFEYNLNTKKIVQVL-------RSNSWLGC 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 17/56 (30%)
Peptidase_M10 115..268 CDD:278824 82/155 (53%)
ZnMc_MMP 115..268 CDD:239805 82/155 (53%)
HX 298..493 CDD:238046 57/200 (29%)
mmp1NP_001025501.1 PG_binding_1 32..87 CDD:366659 17/56 (30%)
Peptidase_M10 108..263 CDD:334067 82/155 (53%)
HX 277..467 CDD:238046 57/201 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.110

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