DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp19

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_067387.1 Gene:Mmp19 / 58223 MGIID:1927899 Length:527 Species:Mus musculus


Alignment Length:525 Identity:200/525 - (38%)
Similarity:270/525 - (51%) Gaps:62/525 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 YLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVG 100
            ||.|:|||...........|.|   ...|:..||..:||.|:|::|..|...|..||||:.|.. 
Mouse    32 YLLQYGYLQKPLEGADDFRLED---ITEALRTFQEASGLPISGQMDDATRARMKQPRCGLEDPF- 92

  Fly   101 TGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVH 165
              :.:|.:|.|.| .||.||||::|...|..|....|.|.:.:||..||....|||....:|...
Mouse    93 --NQKSLKYLLLG-HWRKKNLTFRIFNVPSTLSLPRVRAALHQAFKYWSSVAPLTFREVKAGWAD 154

  Fly   166 IEIKFVESEHGD-----GDAFDGQGGTLAHAFFPVFGGDAHFDDAELWTIGSPRGTNLFQVAAHE 225
            |.:.|    ||.     .:.|||.|..||||..|.. |..|||..||||.|:.:|.||..:||||
Mouse   155 IRLSF----HGRQSLYCSNTFDGPGKVLAHADIPEL-GSIHFDKDELWTEGTYQGVNLRIIAAHE 214

  Fly   226 FGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYGRKTNQLRP-------TNVYPAT 283
            .||:|||.||..:.|||||.|.|::|.|||..||.|.||:|||:::.:.|.       ..|.|.|
Mouse   215 VGHALGLGHSRYTQALMAPVYAGYQPFFKLHPDDVAGIQALYGKRSPETRDEEEETEMLTVSPVT 279

  Fly   284 TQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQL--ISKGWPG 346
            .:    |..:|   :.| ..:||.:....:|:||||||| |....|||   |...|  ||..|.|
Mouse   280 AK----PGPMP---NPC-SGEVDAMVLGPRGKTYAFKGD-YVWTVTDS---GPGPLFQISALWEG 332

  Fly   347 LPGNIDAA-FTYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAAMVWGGNGKIY 410
            ||||:||| ::.:..:|:||||.:.|||...:|...:|.:    |..:..:||||:.|..|.|::
Mouse   333 LPGNLDAAVYSPRTRRTHFFKGNKVWRYVDFKMSPGFPMK----FNRVEPNLDAALYWPVNQKVF 393

  Fly   411 FFKGSKFWRFDPAKRPPVKASYPKPISN-WEGVPNNLDAALKYTNGYTYFFKGDKYYRFH-DARF 473
            .||||.:|::|...|..: :.|||||.. :.|||:...||:.:.:|..|||||.:|:|.: ..|.
Mouse   394 LFKGSGYWQWDELARTDL-SRYPKPIKELFTGVPDRPSAAMSWQDGQVYFFKGKEYWRLNQQLRV 457

  Fly   474 AVDSATPPFPRPTAHWWFGCKNTP---SSTGNI-------VEGSDNEFEQHSM-IPHADDGNGDD 527
            |     ..:||.|.||......||   ||||::       |.|:.......:: ||.|.|.....
Mouse   458 A-----KGYPRNTTHWMHCGSQTPDTNSSTGDVTPSTTDTVLGTTPSTMGSTLDIPSATDSASLS 517

  Fly   528 FDAAV 532
            |.|.|
Mouse   518 FSANV 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 17/51 (33%)
Peptidase_M10 115..268 CDD:278824 72/157 (46%)
ZnMc_MMP 115..268 CDD:239805 72/157 (46%)
HX 298..493 CDD:238046 78/199 (39%)
Mmp19NP_067387.1 PG_binding_1 32..81 CDD:279773 17/51 (33%)
Cysteine switch. /evidence=ECO:0000250 84..91 4/6 (67%)
Peptidase_M10 104..257 CDD:278824 72/157 (46%)
ZnMc_MMP 105..257 CDD:239805 72/156 (46%)
HX 286..471 CDD:238046 79/202 (39%)
Hemopexin 1 286..333 21/54 (39%)
Hemopexin 2 334..372 16/37 (43%)
Hemopexin 3 377..425 19/48 (40%)
Hemopexin 4 426..471 18/49 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 473..500 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.880

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