DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp11b

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_694153.4 Gene:mmp11b / 565793 ZFINID:ZDB-GENE-070817-2 Length:506 Species:Danio rerio


Alignment Length:440 Identity:165/440 - (37%)
Similarity:228/440 - (51%) Gaps:53/440 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 PRCGVRD----RVGT-------------GDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVD 138
            |||||.|    :.|:             |..|.||:.|...||...:|||||.:.|:::....|.
Zfish    77 PRCGVPDYPSEKGGSSLHFSAHKGGLLGGRHRRKRFDLFPGRWDKTDLTYKIIQSPRQMNLERVR 141

  Fly   139 AEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP--VFGGDAH 201
            ..|..|...||::|.|.||...||...|...|....|||...|||.||.|||||||  ...|:.|
Zfish   142 YVIREALRAWSDETPLNFTEVLSGRADIMFDFYRYSHGDYLNFDGPGGILAHAFFPRTYREGEIH 206

  Fly   202 FDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSL 266
            ||..|.||:|:..||:|.|||.||.||.|||.||....|:|||||....|| :|.||||..||:|
Zfish   207 FDMDESWTLGNSMGTDLLQVATHEIGHVLGLQHSKVPGAVMAPFYTFSNPV-RLSEDDKRGIQAL 270

  Fly   267 YGRKTN-------QLRPT----NVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSA---QGETY 317
            ||.|.:       :.|||    |...||...|..|.  |.....|:     |.|::.   :||.:
Zfish   271 YGSKRSDETVKAAERRPTFTERNEIDATFFPPVHPN--PSHPDACQ-----TNFDAVSMIRGELF 328

  Fly   318 AFKGDKYYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFTYKNGKTYFFKGTQYWRYQG-RQMDGV 381
            .||....:::....::.|||.|.|:.|.|:|.||||||...:|..:||:|..||.:.. ||:.| 
Zfish   329 FFKSGYVWRIRDGKLQAGYPALASRHWRGIPDNIDAAFEDMSGNIWFFQGQNYWVFDAERQITG- 392

  Fly   382 YPKEISE-GFTGIPDHLDAAMVWGGN--GKIYFFKGSKFWRFDPAKRPPVKASYPKPISNWEGVP 443
             |..:.. |.  :.:.:.||::||..  .||||||...:|||: .|...|::.:|:.:|:|.|:|
Zfish   393 -PDSVQRLGL--LVNDIQAALMWGDTKAQKIYFFKKGSYWRFN-LKENRVESMHPRSMSDWRGIP 453

  Fly   444 NNLDAALKYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWWFGC 493
            :::|||.:...|:.:|.:|.:|::|......|   ...:||.....:|||
Zfish   454 SDIDAAFQDRFGFAHFLRGKQYWKFDPVEVRV---LEGYPRYIGVDFFGC 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773
Peptidase_M10 115..268 CDD:278824 75/154 (49%)
ZnMc_MMP 115..268 CDD:239805 75/154 (49%)
HX 298..493 CDD:238046 64/201 (32%)
mmp11bXP_694153.4 Peptidase_M10 118..272 CDD:278824 75/154 (49%)
ZnMc_MMP 118..272 CDD:239805 75/154 (49%)
HX 310..500 CDD:238046 64/202 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 144 1.000 Domainoid score I4551
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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