DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp11a

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_021334138.1 Gene:mmp11a / 563753 ZFINID:ZDB-GENE-070817-3 Length:483 Species:Danio rerio


Alignment Length:427 Identity:156/427 - (36%)
Similarity:205/427 - (48%) Gaps:52/427 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 RCGVRDRVGTGD--SRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDL 154
            ||||.|.....|  .|.|||.|.|.||...:|||||.::|.:::...|......|..|||:.|.|
Zfish    88 RCGVPDYPEQRDVHLRQKRYVLFGGRWPKTDLTYKIQRFPWQMREDKVRRIFQEALKVWSDVTPL 152

  Fly   155 TFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFPVF--GGDAHFDDAELWTIGSPRGTN 217
            |||...:....|.|.|....|||...|||.||.|||||||..  .||.|||..|.||:|:..||:
Zfish   153 TFTEVVNQEADIVIDFTRYWHGDNLPFDGPGGILAHAFFPRTHREGDIHFDYDESWTVGNELGTD 217

  Fly   218 LFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPA 282
            |.|||||||||.|||.||....|:|:||| .|....||.||||..||.|||            |.
Zfish   218 LLQVAAHEFGHVLGLQHSLVPGAIMSPFY-SFSYPLKLSEDDKKGIQYLYG------------PP 269

  Fly   283 TTQRPYSPPKVPLDDSICKDSKVDTLFNSA---QGETYAFKGDKYYKLTTDSVEEGYPQLISKGW 344
            ...:|..|.:.....|........|.|::.   :||.:.||....:::....::.|||.|.|:.|
Zfish   270 VRAQPQIPAETNDIPSAFPPDACHTDFDAVSIIRGELFFFKASYAWRIRDGRLQAGYPALASRHW 334

  Fly   345 PGLPGNIDAAFTYKNGKTYFFKGTQYWRYQG-RQMDGVYPKEISEGFTGIPDHLDAAMVWGGN-- 406
            .|:|..||||:..|.|..:||:|:.||.:.. .::.|             ||.|.:..:...|  
Zfish   335 SGIPQKIDAAYEDKKGNIWFFEGSNYWVFDAEHRIKG-------------PDSLLSLGLRVSNIQ 386

  Fly   407 ----------GKIYFFKGSKFWRFDPAKRPPVKASYPKPI-SNWEGVPNNLDAALKYTNGYTYFF 460
                      ...||||...:||.||.:. .|..|.|:.| .:|.|||..:|||.:..:|:..|.
Zfish   387 AALRVKEHHSQHTYFFKSGNYWRLDPQEN-RVDTSAPRRIQQDWWGVPEEIDAAFQEASGFVVFI 450

  Fly   461 KGDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNTP 497
            ...:|::|...:..|   ...:||.....:||| |.|
Zfish   451 SRRQYWKFDPVQRKV---LEGYPRYIGADFFGC-NMP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 77/154 (50%)
HX 298..493 CDD:238046 58/211 (27%)
mmp11aXP_021334138.1 ZnMc_MMP 113..267 CDD:239805 77/154 (50%)
HX 289..480 CDD:238046 57/207 (28%)
Blue background indicates that the domain is not in the aligned region.

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