DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and vtna

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001018508.1 Gene:vtna / 553699 ZFINID:ZDB-GENE-050522-440 Length:514 Species:Danio rerio


Alignment Length:388 Identity:101/388 - (26%)
Similarity:134/388 - (34%) Gaps:169/388 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   276 PTNVYPATT-------QRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVE 333
            |||..||||       |...:..|.| |..:|.....|.......|..|||:|:.:::|...||.
Zfish   123 PTNKNPATTPGATTTAQPTPTKAKDP-DAEVCSGRPFDAFMQLKNGSIYAFRGEYFFELDEKSVL 186

  Fly   334 EGYPQLISKGWPGLPGNIDAAFTYKN--GKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDH 396
            .|||:||...| |:.|.||||||..|  ||||.|||.:|||:....:|..:|::|:.||..||||
Zfish   187 PGYPKLIEDIW-GIKGPIDAAFTRINCQGKTYIFKGNKYWRFDDGVLDDDFPRDIAVGFEKIPDH 250

  Fly   397 LDAAMV-----WGGNGKIYFFKGSKFWRFD----PAKRPPVKASYPKPI---------------- 436
            ||||..     ..|..|:|||||.:::.::    |:....:|.|...|.                
Zfish   251 LDAAFATPAHSHHGKEKVYFFKGDQYYHYEFKHQPSHEECIKMSLRSPSMLFRRYTDIYYDRWTE 315

  Fly   437 -------------------SNWEGVPNNLDAAL-------------------------------- 450
                               .:|.|:.:.:||.|                                
Zfish   316 HFNQLFGGAHSHYGHHFINRDWIGIKSPVDAVLVGRLYVTPRWQNRRRQDRNRQDWDQQQGQQYG 380

  Fly   451 -----KY----------------------------------------------------TNGY-- 456
                 :|                                                    .|.|  
Zfish   381 QQWDQRYGQQWGSRRRQNRSPYWESMAERGISIGQEFSQRFGQDRWRDQDRRRDYYYDRQNDYDY 445

  Fly   457 -----------------------TYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNT 496
                                   .||||||||||.:.....||.|.||:|||...:|.|||:|
Zfish   446 DYRYKPTEDIVYNILRRSQPLQSVYFFKGDKYYRVNLQTKRVDYANPPYPRPIGKYWLGCKDT 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668
HX 298..493 CDD:238046 86/354 (24%)
vtnaNP_001018508.1 Somatomedin_B 19..58 CDD:460034
HX 151..>299 CDD:238046 58/148 (39%)
HX <469..504 CDD:214524 19/34 (56%)
Blue background indicates that the domain is not in the aligned region.

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