DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp23bb

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001017890.1 Gene:mmp23bb / 550589 ZFINID:ZDB-GENE-050417-448 Length:377 Species:Danio rerio


Alignment Length:307 Identity:99/307 - (32%)
Similarity:127/307 - (41%) Gaps:85/307 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 GDSRSKRYALQ--GSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTR--KTSG 162
            |.:||||||:.  |.||...|::|||:|:|..|.:.|....|..||..||:.:.||||.  .||.
Zfish    52 GAARSKRYAINPLGYRWEHFNVSYKITKFPNTLNKDDTRKAISIAFTKWSDVSPLTFTEITNTSK 116

  Fly   163 PVHIEIKFVESEHGD------GDAFDGQGGTLAHAFFPVFGGDAHFDDAELWTIGSPRGT----- 216
            ...|.|.|....|.|      ...|||..|.|||||.|. .|:.|||:.|.|.:|..|.:     
Zfish   117 SADITIGFYTYNHTDCWRSPLHPCFDGLNGELAHAFLPP-RGEIHFDNHEFWILGKSRFSWKQGV 180

  Fly   217 ---NLFQVAAHEFGHSLGLSHSDQSSALMAP--FYRGFEPVFKLDEDDKAAIQSLYG-------- 268
               :|.||||||.||:|||.||...:|||.|  .|.|..   .:.:||...||.|||        
Zfish   181 WLNDLVQVAAHEIGHALGLWHSQDPNALMHPNATYTGQR---NIAQDDIWGIQRLYGCMDKKRVC 242

  Fly   269 ----------RKTNQLR-----------------------PTNV------------YPATTQRPY 288
                      |:.:.::                       |.||            :...|:...
Zfish   243 DPWARLGFCERRRSFMKKNCPQRCDLCYEPLDAVSTPTPPPENVKIKIVPRGKVVGFRCGTKSTR 307

  Fly   289 SPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEG 335
            .||||    |..||.  :.|..|..|  |....|:..:|..:...||
Zfish   308 VPPKV----SWYKDG--EQLLTSIPG--YIVIKDRDLRLVANEFNEG 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 69/170 (41%)
HX 298..493 CDD:238046 11/38 (29%)
mmp23bbNP_001017890.1 ZnMc_MMP 67..234 CDD:239805 69/170 (41%)
ShK 234..269 CDD:426319 2/34 (6%)
Ig 282..351 CDD:472250 19/73 (26%)
Ig strand B 297..301 CDD:409353 0/3 (0%)
Ig strand C 311..315 CDD:409353 3/7 (43%)
Ig strand E 335..339 CDD:409353 0/3 (0%)
Ig strand F 347..351 CDD:409353 99/307 (32%)
Blue background indicates that the domain is not in the aligned region.

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