DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp2

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001015789.1 Gene:mmp2 / 548506 XenbaseID:XB-GENE-482841 Length:655 Species:Xenopus tropicalis


Alignment Length:654 Identity:186/654 - (28%)
Similarity:249/654 - (38%) Gaps:219/654 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VFIVVGTLFSIMAA--------AQSAPVSTTTQAEIYLSQFGYLPASARNPASSGLHDQRTWVSA 64
            :|..:.|.:.:.:|        ...:|.|....|..||:||...|....:        ......|
 Frog    12 IFKSLSTFYYVSSAPSPIIKFPGDKSPKSDVEFAAQYLNQFYGCPKDKCH--------MMVLKDA 68

  Fly    65 IEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGSRWRVKNLTYKISKYP 129
            :::.|.|.||..|||.|..|::.|..|||      |..|..:..:..:..:|....|||:|..|.
 Frog    69 LKKMQKFFGLTETGEFDQNTIETMKKPRC------GNPDVANYNFFPRKPKWDKNQLTYRIIGYT 127

  Fly   130 KRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP 194
            ..|....||....|||.|||:.|.|.|||...|...|.|.|...|||||..|||:.|.|||||.|
 Frog   128 TDLDSETVDDAFARAFKVWSDVTPLEFTRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAP 192

  Fly   195 --VFGGDAHFDDAELWTI----------------------------------------------- 210
              ..|||:||||.||||:                                               
 Frog   193 GSGVGGDSHFDDDELWTLGEGQVVKVKYGNADGEFCKFPFMFNDKEYNSCTDSGRSDGFLWCSTT 257

  Fly   211 ----------------------------------------------------------------- 210
                                                                             
 Frog   258 YDFDKDGKYGFCPHELLFTLAGNAEGKPCKFPFKFQGSTFDSCTTEGRTDGYRWCATTEDYDKDK 322

  Fly   211 ------------------GSP-------------------------------------------- 213
                              |||                                            
 Frog   323 LYGFCPETALSTVGGNSEGSPCVFPFTFLGNKYDSCTSSGRSDGKLWCASSSNYDDDRKWGFCPD 387

  Fly   214 RGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYGRKTNQL-RPT 277
            :|.:||.||||||||:|||.||....|||||.|. |...|:|.:||...||.|||:.:.:. ||.
 Frog   388 QGYSLFLVAAHEFGHALGLEHSQDPGALMAPIYT-FIKNFRLSQDDITGIQELYGQGSKEKPRPG 451

  Fly   278 NVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLISK 342
               |..|..|.:|      |...||..:|.: :..:|||:.||....::......:...|.|::.
 Frog   452 ---PVPTMGPVTP------DLCSKDVVLDAM-SQIRGETFFFKDRFIWRTPNPRNKPTGPLLVAT 506

  Fly   343 GWPGLPGNIDAAFTY-KNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIP---DHLDAAMVW 403
            .||.||..|||.:.. :..||.||.|.:||.|....::..|||:::.  .|:|   |.:|||..|
 Frog   507 FWPELPDKIDAVYEEPQEEKTVFFAGNEYWVYLSSTLERGYPKKLTS--LGLPPDVDRVDAAFNW 569

  Fly   404 GGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPISN-WEGVPNNLDAALKYT-NGYTYFFKGDKYY 466
            ..|.|.|||.|.||||::..|: .:...:||.|:: |.|||:||||.|..| :||:||||...|:
 Frog   570 SKNKKTYFFTGDKFWRYNEVKK-KMDIGFPKLIADAWNGVPDNLDAVLDQTGSGYSYFFKDWYYF 633

  Fly   467 RFHD 470
            :..|
 Frog   634 QVED 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 16/55 (29%)
Peptidase_M10 115..268 CDD:278824 83/328 (25%)
ZnMc_MMP 115..268 CDD:239805 83/328 (25%)
HX 298..493 CDD:238046 67/179 (37%)
mmp2NP_001015789.1 PG_binding_1 <65..92 CDD:366659 10/26 (38%)
Peptidase_M10 113..441 CDD:334067 83/328 (25%)
FN2 221..269 CDD:128373 0/47 (0%)
FN2 279..327 CDD:128373 0/47 (0%)
FN2 337..385 CDD:128373 3/47 (6%)
HX 461..655 CDD:238046 69/187 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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