DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp7

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001005043.1 Gene:mmp7 / 448575 XenbaseID:XB-GENE-977268 Length:259 Species:Xenopus tropicalis


Alignment Length:276 Identity:114/276 - (41%)
Similarity:147/276 - (53%) Gaps:33/276 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SVFIVVGTLFSIM---AAAQSAPVSTTTQ--AEIYLSQFGYLPASARNPASSGLHDQRTWVSAIE 66
            ::.:|:.:|..|.   |.....|:|.:.:  ||.||..|..:.:.::|          |:...|:
 Frog     4 AILLVIVSLSCIQAMPAPLPQDPISPSDRMFAEQYLDTFYLMRSKSKN----------TFAEKIK 58

  Fly    67 EFQSFAGLNITGELDAETMKLMSLPRCGVRD----RVGTGDSRSKRYALQGSRWRVKNLTYKISK 127
            |.|.|.|:::||.||::||.:|..||||:.|    |...|:          .:|....|||.|..
 Frog    59 EMQKFFGMSVTGRLDSDTMAMMKTPRCGMPDIAEFRQFPGN----------PKWTKTRLTYSIVN 113

  Fly   128 YPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAF 192
            |...|.|..||..|.|||.|||..|.|.||:.:||...|.|:|....|||...|||..|.||||:
 Frog   114 YTPDLSRQVVDTAIQRAFGVWSNVTPLQFTKVSSGDADILIRFGARTHGDSSPFDGPSGVLAHAY 178

  Fly   193 FP--VFGGDAHFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFE-PVFK 254
            .|  ..|||||||:.|.|| .|..|.|||.||||||||||||.||....|||.|.|...: ..|:
 Frog   179 GPGRGIGGDAHFDEDERWT-SSRTGFNLFLVAAHEFGHSLGLDHSTDPRALMFPTYHYVDTQAFR 242

  Fly   255 LDEDDKAAIQSLYGRK 270
            |.:||...|||:|||:
 Frog   243 LSQDDINGIQSIYGRR 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223 18/57 (32%)
Peptidase_M10 115..268 CDD:425668 79/155 (51%)
HX 298..493 CDD:238046
mmp7NP_001005043.1 PG_binding_1 28..80 CDD:460223 19/61 (31%)
Peptidase_M10 101..256 CDD:425668 79/155 (51%)
Blue background indicates that the domain is not in the aligned region.

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