DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Bsph1

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001028590.1 Gene:Bsph1 / 330470 MGIID:2685613 Length:133 Species:Mus musculus


Alignment Length:105 Identity:27/105 - (25%)
Similarity:39/105 - (37%) Gaps:52/105 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 PLD---DSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSV------EEG---YPQL------- 339
            |||   .|||       ||:|    .::|:.:.||..|.:|:      |:|   :|.|       
Mouse     4 PLDFLLVSIC-------LFHS----LFSFQVEDYYAPTIESLIRNPETEDGACVFPFLYRSEIFY 57

  Fly   340 ------ISKGWPGLPGNIDAAFTYKNGKTYFFKGTQYWRY 373
                  :...|..|            .|||  :|  ||:|
Mouse    58 DCVNFNLKHKWCSL------------NKTY--QG--YWKY 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773
Peptidase_M10 115..268 CDD:278824
ZnMc_MMP 115..268 CDD:239805
HX 298..493 CDD:238046 24/98 (24%)
Bsph1NP_001028590.1 fn2 90..131 CDD:278469
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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