Protein Alignment Mmp1 and Mmp1

DIOPT Version :9

• Sequence 1: NP_726473.2
• Gene: Mmp1 / 37949
• FlyBaseID: FBgn0035049
• Length: 584
• Species: Drosophila melanogaster
• Sequence 2: NP_001128002.1
• Gene: Mmp1 / 300339
• RGDID: 1307917
• Length: 464
• Species: Rattus norvegicus
• Alignment Length: 450
• Identity: 149/450 - (33%)
• Similarity: 204/450 - (45%)
• Gaps: 67/450 - (14%)

  Fly    65 IEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYAL--QGSRWRVKNLTYKISK 127
            :.:.|...||.:||..::||:..|..|||||.|        ...||:  ...||...:|||.|..
  Rat    61 LRQMQQLFGLKVTGNSNSETLSAMRKPRCGVPD--------VAPYAITHNNPRWTKTHLTYSILN 117

  Fly   128 YPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAF 192
            |...|.:..::..|.|||.|||:.|.|||.|.......|...|...:|.|.:.|||....|||.|
  Rat   118 YTPYLPKEVIENAIERAFKVWSDVTPLTFERVFEEEGDIVFAFYRGDHSDNNPFDGPEYGLAHTF 182

  Fly   193 --FPVFGGDAHFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKL 255
              .|..|||.|:|..|.||..|. ..|||.|.|||.||||||:||....|||.|.|..:...|.|
  Rat   183 PPGPRLGGDVHYDLDETWTDNSD-NFNLFYVTAHELGHSLGLTHSRDVGALMFPSYTWYTEDFVL 246

  Fly   256 DEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFK 320
            :::|...||:|||...|.::||.   |||..|            |..........:.:||...||
  Rat   247 NQEDINRIQALYGPSPNPIQPTG---ATTPHP------------CDGDLTFDAITTFRGEVMFFK 296

  Fly   321 GDKYYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFTYKN-GKTYFFKGTQYWRYQGRQMDGVYPK 384
            | ::|......:.|....||...||.|||.:|||:.... .:..:|||.:.|..:...:...:|.
  Rat   297 G-RFYIRVNKFMPEAELNLIGIIWPNLPGKLDAAYEVSMIDQVRYFKGNKVWVVREHTVLRGFPT 360

  Fly   385 EISEGFTGIPD---HLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPK-PISNWEGVPNN 445
            :| ..|.|.|.   |:|||:.....||.|||..:.:||:| .....:...||: ...::.|:.:.
  Rat   361 DI-HSFFGFPSSVTHIDAAVCEEETGKTYFFVDNMYWRYD-ENTQSMDPGYPRLTAEDFPGIDDK 423

  Fly   446 LDAALKYTNGYTYFFKGDKYYRFHDA---RFAV---------DSATPPFPRPTAHWWFGC 493
            :|         ..|.||:.:|.||.:   ||::         ||:|          ||.|
  Rat   424 VD---------DVFQKGENFYFFHQSVQRRFSLRIRRVDDSRDSST----------WFNC 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Mmp1	NP_726473.2	PG_binding_1	32..88	CDD:279773	7/22 (32%)
		Peptidase_M10	115..268	CDD:278824	67/154 (44%)
		ZnMc_MMP	115..268	CDD:239805	67/154 (44%)
		HX	298..493	CDD:238046	56/211 (27%)
Mmp1	NP_001128002.1	PG_binding_1	26..84	CDD:279773	7/22 (32%)
		Peptidase_M10	105..259	CDD:278824	66/157 (42%)
		ZnMc_MMP	105..259	CDD:239805	66/157 (42%)
		HX	273..464	CDD:238046	52/195 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1565
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1075463at2759
OrthoFinder	1	1.000	-	-		FOG0000127
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X44
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.820