DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp1 and Mmp1b

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_038938724.1 Gene:Mmp1b / 300338 RGDID:1306843 Length:460 Species:Rattus norvegicus


Alignment Length:503 Identity:159/503 - (31%)
Similarity:225/503 - (44%) Gaps:74/503 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFSIMAAAQSAPVSTT-TQAEI-----YLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAG 73
            |..:..::.|.|||.. .|..:     ||...|. ...|:|.....:.|::     :.:.:...|
  Rat     8 LLLLATSSYSLPVSQDGAQQNVETVWKYLENLGE-DMQAKNVDVKEVMDEK-----LRQMEQSFG 66

  Fly    74 LNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYAL--QGSRWRVKNLTYKISKYPKRLKRVD 136
            |.:||..::||...:..|.|||.|        ...|::  ..::|...:|||.|..|...|.|..
  Rat    67 LKVTGNSNSETPSAIKTPMCGVPD--------VTPYSITYNNTQWTKTHLTYSILNYTPHLPRKV 123

  Fly   137 VDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAF--FPVFGGD 199
            |:..|.|||.|||:.|.|||.|.......|.:.|.:.:|||..:|:|.....||||  .|..|||
  Rat   124 VEDAIERAFKVWSDVTPLTFERVFEEEGDIVLSFHQGDHGDLYSFNGSKSHFAHAFPPGPGLGGD 188

  Fly   200 AHFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQ 264
            .|:|..|.||..|. ..|||.|.|||.|||||||||....|||.|.|......|.|::||.:.||
  Rat   189 VHYDLDETWTNNSD-NFNLFYVTAHELGHSLGLSHSKDEEALMFPSYTWNNKDFVLNQDDISKIQ 252

  Fly   265 SLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTT 329
            :|||...|.::||:..|       .|         |..........:.:||...|| |::|....
  Rat   253 ALYGPSPNPIQPTDATP-------DP---------CSSGLTFDAITTYRGEVIFFK-DRFYIRVI 300

  Fly   330 DSVEEGYPQLISKGWPGLPGNIDAAFTYK-NGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGI 393
            ..:.:....:|...||.||..||||:... ..:..||||.:.|..|.:.:...:|.:| ..|.|.
  Rat   301 SFLPKPLINVIDLIWPDLPSKIDAAYEASLVDELRFFKGNKVWAVQEQNVLRGFPTDI-HSFFGF 364

  Fly   394 PD---HLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPIS-NWEGVPNNLDAALKYTN 454
            |.   |:|||:.....||.|||..:.:||:|...| .:...||:.|: ::.|:.:.:|       
  Rat   365 PSSVTHIDAAVCEEETGKTYFFVDNMYWRYDENTR-SMDPGYPRLIAEDFPGIDDKVD------- 421

  Fly   455 GYTYFFKGDKYYRFHDA---------RFAVDSATPPFPRPTAHWWFGC 493
              ..|.|.|.:|.||.:         |..||:       |.:..||.|
  Rat   422 --DVFQKEDNFYFFHQSTQHIFNLQTRKIVDA-------PDSSSWFNC 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 13/60 (22%)
Peptidase_M10 115..268 CDD:278824 70/154 (45%)
ZnMc_MMP 115..268 CDD:239805 70/154 (45%)
HX 298..493 CDD:238046 57/208 (27%)
Mmp1bXP_038938724.1 PG_binding_1 27..77 CDD:396175 10/55 (18%)
Peptidase_M10 103..256 CDD:395334 70/153 (46%)
HX 269..460 CDD:238046 59/225 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
66.020

Return to query results.
Submit another query.