DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp15

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001099638.1 Gene:Mmp15 / 291848 RGDID:1308937 Length:657 Species:Rattus norvegicus


Alignment Length:648 Identity:212/648 - (32%)
Similarity:300/648 - (46%) Gaps:114/648 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QSSVFIVVGTLFSIMAAAQSAPVSTTTQAEIYLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQ 69
            ::|:.:::..|...:....::..:....||.:|..:||||..:|:  .|.:...:...||:.|.|
  Rat    21 RASLLLLLLVLLDCLGGGTASEDAEVYAAENWLRLYGYLPQPSRH--MSTMRSAQILASALAEMQ 83

  Fly    70 SFAGLNITGELDAETMKLMSLPRCGVRDRVGTG-----DSRSKRYALQGSRWRVKNLTYKISKYP 129
            ||.|:.:||.||.||...|..|||||.|:.|..     ..|.:||.|.|..|...:||:.|..|.
  Rat    84 SFYGIPVTGVLDEETKTWMKRPRCGVPDQFGVRVKANLRRRRRRYTLTGKTWSNYHLTFSIQNYT 148

  Fly   130 KRLKRVDVDAEIGRAFAVWSEDTDLTFTR--------KTSGPVHIEIKFVESEHGDGDAFDGQGG 186
            ::|...:....:.|||.||.:.|.|.|..        :......|.:.|....|||...|||.||
  Rat   149 EKLGWYNSMEAVRRAFQVWEQVTPLVFQEVPYDDIRLRRRAEADIMVLFASGFHGDSSPFDGVGG 213

  Fly   187 TLAHAFF--PVFGGDAHFDDAELWTIGSP--RGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYR 247
            .||||:|  |..|||.|||..|.||..|.  .|.:||.||.||.||:|||.||...||:|||||:
  Rat   214 FLAHAYFPGPGLGGDTHFDADEPWTFSSTDLHGISLFLVAVHELGHALGLEHSSNPSAIMAPFYQ 278

  Fly   248 GFE-PVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRP-------YSPPKVP---------- 294
            ..: ..|:|.|||...||.|||....:.:||.  |..|.||       :.||:.|          
  Rat   279 WMDTDNFQLPEDDLRGIQQLYGSPDGKPQPTR--PLPTVRPRRPGRPDHQPPRPPQPPHPGGKPE 341

  Fly   295 -------------------LDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLI 340
                               ...:|| |...||: ...:||.:.|||..::::..:.|.:.||..|
  Rat   342 RPPKPGPPPQPRATERPDQYGPNIC-DGNFDTV-AVLRGEMFVFKGRWFWRVRHNRVLDNYPMPI 404

  Fly   341 SKGWPGLPGNIDAAFTYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIP-DHLDAAMVWG 404
            ...|.||||||.||:..::|...||||.:||.::...::..||:.:|...|.|| |.:|.|:.|.
  Rat   405 GHFWRGLPGNISAAYERQDGHFVFFKGNRYWLFREANLEPGYPQPLSSYGTDIPYDRIDTAIWWE 469

  Fly   405 GNGKIYFFKGSKFWRF-------DPAKRPPVKASYPKPISNWEGVPNNLDAA-LKYTNGYTYFFK 461
            ..|..:||:..::|||       ||        .||||||.|:|:||:...| |.....||||:|
  Rat   470 PTGHTFFFQADRYWRFNEETQHGDP--------GYPKPISVWQGIPNSPKGAFLSNDAAYTYFYK 526

  Fly   462 GDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKN--TPSSTG--------NIVEGSDNEFEQHSM 516
            |.||::|::.|..::   |..|:.....:.||:.  .|.|..        |...|::.|.|    
  Rat   527 GTKYWKFNNERLRME---PGHPKSILRDFMGCQEHVEPRSRWPDVARPPFNPNGGAEPETE---- 584

  Fly   517 IPHADDGNGDDFDAAVGDHQSNDEPIVP-EVAERTGNGAMSQSKLTSSSAVSTVITTILMCLV 578
                ||...:|    |||.......:|. |...||.|..|           ..|...:|:|::
  Rat   585 ----DDSKEED----VGDKDEGSRVVVQMEEVVRTVNVVM-----------VLVPLLLLLCIL 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223 22/55 (40%)
Peptidase_M10 115..268 CDD:425668 69/165 (42%)
HX 298..493 CDD:238046 72/203 (35%)
Mmp15NP_001099638.1 PG_binding_1 42..102 CDD:460223 22/61 (36%)
Peptidase_M10 135..300 CDD:425668 69/164 (42%)
HX 363..555 CDD:238046 72/204 (35%)
DUF3377 <632..657 CDD:463374
Blue background indicates that the domain is not in the aligned region.

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