DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp23

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_006538942.1 Gene:Mmp23 / 26561 MGIID:1347361 Length:420 Species:Mus musculus


Alignment Length:358 Identity:91/358 - (25%)
Similarity:132/358 - (36%) Gaps:122/358 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SRSKRYALQGS--RWRVKNLTY-----------------------------KISKYPKR-LKRVD 136
            :|.:||.|..:  ||...||||                             ::..:|:. |...:
Mouse    75 TRRRRYTLTPARLRWDHFNLTYRCHLDQRGGWSGHNSDTNTDSNITAALHHRVLSFPRNLLSPEE 139

  Fly   137 VDAEIGRAFAVWSEDTDLTFTR-KTSGPVHIEIKFVESEHGD------GDAFDGQGGTLAHAFFP 194
            ....:..||.:||:.:..:|.. ....|..::|.|....|.|      ...|||..|.|||||||
Mouse   140 TRRGLAAAFRMWSDVSPFSFREVAPERPSDLKIGFYPVNHTDCLVSAVHHCFDGPTGELAHAFFP 204

  Fly   195 VFGGDAHFDDAELWTIGSPRG--------TNLFQVAAHEFGHSLGLSHSDQSSALM--APFYRGF 249
            ..|| .||||:|.|.:|..|.        |||..|||||.||:|||.||.|..|||  ....||:
Mouse   205 PHGG-IHFDDSEYWVLGPTRYSWKKGVWLTNLVHVAAHEIGHALGLMHSQQDQALMHLNATLRGW 268

  Fly   250 EPVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQG 314
            :   .|.:|:...:..|||                               |    :|.:|..|  
Mouse   269 K---ALSQDELWGLHRLYG-------------------------------C----LDRIFVCA-- 293

  Fly   315 ETYAFKG-----------------DKYYKL------TTDSVEEGYPQLISKGWPGLPGNIDAAFT 356
             ::|.||                 |..|:.      ||.|......:|:.:| ..:..:......
Mouse   294 -SWARKGFCDVRQRLMKRLCPRSCDFCYEFPFPTVATTTSPTRTKTRLVREG-RNMTFHCGQKIL 356

  Fly   357 YKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEG 389
            :|.||.|::|..:       .::..||..::.|
Mouse   357 HKKGKVYWYKDQE-------PLEFSYPGYLALG 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 63/199 (32%)
HX 298..493 CDD:238046 22/115 (19%)
Mmp23XP_006538942.1 ZnMc_MMP 88..284 CDD:239805 63/199 (32%)
ShKT 285..319 CDD:214586 8/40 (20%)
Ig_3 341..403 CDD:464046 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.

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