DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp25

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001028511.1 Gene:Mmp25 / 240047 MGIID:2443938 Length:615 Species:Mus musculus


Alignment Length:572 Identity:190/572 - (33%)
Similarity:278/572 - (48%) Gaps:84/572 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AQSAPVSTTTQAEIYLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMK 86
            ||:......:....:|:::||||.:  :|..:.:........||:..|.||||..||::|..|:|
Mouse    76 AQNPDAKVVSMGVEWLTRYGYLPPA--DPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIK 138

  Fly    87 LMSLPRCGVRDRVGTGD--SRSKRYALQGSRWRVKNLTYKISKYPKR--LKRVDVDAEIGRAFAV 147
            .|..|||.:.|.:|...  .|.:||:|.||.|:.:.||:.|..:.::  |....|...:..|.||
Mouse   139 TMRKPRCSLPDVLGAAGLVRRRRRYSLSGSVWKKRTLTWSIRSFSQKSQLSPQIVRTLLSYALAV 203

  Fly   148 WSEDTDLTFTRKTS--GPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP---VFGGDAHFDDAEL 207
            |:.::.|||....|  ....|.|.|..:.|.|...|||.||||||||||   ...||.||||.|.
Mouse   204 WATESGLTFQEVNSQYQEPDIIIHFARAYHQDSYPFDGSGGTLAHAFFPGEHPISGDTHFDDEET 268

  Fly   208 WTIGS--PRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPV-----FKLDEDDKAAIQS 265
            ||.||  ..|.:||.||.|||||:|||.||...:::|.|||:|  ||     ::|.:||:..:|.
Mouse   269 WTFGSTDDNGIDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQG--PVGDPATYRLPQDDRDGLQQ 331

  Fly   266 LYGR--KTNQLRPTN--VYPATTQRPYSPPKVPLDDSI------CKDSKVDTLFNSAQGETYAFK 320
            ||||  :....|||.  :.|     |..||.:|.|...      | :...|.:.| .:||.:.||
Mouse   332 LYGRVSQNPNARPTRKPLVP-----PPQPPAMPPDSPATPVPDRC-EGNFDAVAN-IRGEIFLFK 389

  Fly   321 GDKYYKLTTDSVEEGYPQLIS-------KGWPGLPGN---IDAAFTYK-NGKTYFFKGTQYWRYQ 374
            |..:::|....      ||:|       :.|.|||.:   |.||:... :|:...|.|.|:|.:|
Mouse   390 GPWFWRLQPSG------QLVSPRPAGLHRFWEGLPTHVKVIQAAYARPLDGRIILFSGPQFWVFQ 448

  Fly   375 GRQMDGVYPKEISEGFTGIP--DHLDAAMVWGGNGKIYFFKGSKFWRFDP-AKRPPVKASYPKPI 436
            .||::|. .:.:.|  .|:|  :.:||...|..|||.|..:|.|:||:|. |.||  ...||:.:
Mouse   449 ERQLEGA-ARPLVE--FGLPPGEDVDAVFSWPHNGKTYLIRGQKYWRYDEVAARP--DPGYPRAL 508

  Fly   437 SNWEGVPNNLDAALKYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNTPSSTG 501
            |.|:|.|...|.......|.||||||..::||.:.....:|.:   |:|....|..|. .|:|..
Mouse   509 SLWDGAPFAPDDVTISNTGDTYFFKGTHFWRFAEGSVKAESDS---PQPIGPKWLDCP-APNSDP 569

  Fly   502 NIVEGSDNEFEQHSMIPHADDGNGDDFDAAVGDHQSNDE------PIVPEVA 547
            .:........:..|...|.:            .:|::::      |::|.||
Mouse   570 RVTSPPKTTSKTRSCDCHCE------------LNQASEQLSPLLLPLLPLVA 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 18/55 (33%)
Peptidase_M10 115..268 CDD:278824 70/166 (42%)
ZnMc_MMP 115..268 CDD:239805 70/166 (42%)
HX 298..493 CDD:238046 66/214 (31%)
Mmp25NP_001028511.1 PG_binding_1 89..140 CDD:279773 18/52 (35%)
Cysteine switch. /evidence=ECO:0000250 143..150 3/6 (50%)
Peptidase_M10 170..334 CDD:278824 70/165 (42%)
ZnMc_MMP 170..334 CDD:239805 70/165 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..366 9/34 (26%)
HX 368..562 CDD:238046 66/209 (32%)
Hemopexin 1 368..417 13/56 (23%)
Hemopexin 2 421..466 14/47 (30%)
Hemopexin 3 467..515 20/49 (41%)
Hemopexin 4 516..562 14/48 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 547..582 7/38 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42430
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.850

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