DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp17

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_035976.3 Gene:Mmp17 / 23948 MGIID:1346076 Length:578 Species:Mus musculus


Alignment Length:533 Identity:177/533 - (33%)
Similarity:260/533 - (48%) Gaps:86/533 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFSIMAAAQSAPVSTTTQAE------IYLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAG 73
            |..:..||.....:...:||      .:||:|||||.:  :|||..|..|.....||...|.|.|
Mouse    27 LLVLALAAHGGCAAPAPRAEDLSLGVEWLSRFGYLPPA--DPASGQLQTQEELSKAITAMQQFGG 89

  Fly    74 LNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVD 138
            |..||.||..|:.||..|||.:.|......||.||.....::|..:||::::..:|:       |
Mouse    90 LETTGILDEATLALMKTPRCSLPDLPPGAQSRRKRQTPPPTKWSKRNLSWRVRTFPR-------D 147

  Fly   139 AEIGR---------AFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP 194
            :.:||         |..|||:.|.|.|.........|:|.|.:::|.||..|||.|||:||||||
Mouse   148 SPLGRDTVRALMYYALKVWSDITPLNFHEVAGNAADIQIDFSKADHNDGYPFDGPGGTVAHAFFP 212

  Fly   195 ---VFGGDAHFDDAELWTIGS--PRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPV-- 252
               ...||.||||.|.||..|  ..|.:||.||.|||||::||||....|::|.|:|:|  ||  
Mouse   213 GDHHTAGDTHFDDDEPWTFRSSDAHGMDLFAVAVHEFGHAIGLSHVAAPSSIMQPYYQG--PVGD 275

  Fly   253 ---FKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLD------------------ 296
               :.|..:|:..:..|||.: ..:.||  ....|..|..||.:|..                  
Mouse   276 PLRYGLPYEDRVRVWQLYGVR-ESVSPT--AQLDTPEPEEPPLLPEPPNNRSSTPPQKDVPHRCT 337

  Fly   297 ---DSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTD----SVEEGYPQLISKGWPGLP---GNI 351
               |::.:          .:||.:.|||..:::||.|    |::   |..:.:.|.|||   .::
Mouse   338 AHFDAVAQ----------IRGEAFFFKGKYFWRLTRDRHLVSLQ---PAQMHRFWRGLPLHLDSV 389

  Fly   352 DAAF-TYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAAMVWGGNGKIYFFKGS 415
            ||.: ...:.|..||||.:||.::...::..||:.:|: |:..|..:||...|..|.:.||||..
Mouse   390 DAVYERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSD-FSLPPGGIDAVFSWAHNDRTYFFKDQ 453

  Fly   416 KFWRFDPAKRPPVKASYPKPISNWEGVPNNLDAALKYTNGYTYFFKGDKYYRFHDARFAVDSATP 480
            .:||:|...| .:...||.....|.|||:.||.|:::::|.:|||:|.:|::..|...   .|.|
Mouse   454 LYWRYDDHTR-RMDPGYPAQGPLWRGVPSMLDDAMRWSDGASYFFRGQEYWKVLDGEL---EAAP 514

  Fly   481 PFPRPTAHWWFGC 493
            .:|:.||..|..|
Mouse   515 GYPQSTARDWLVC 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223 25/61 (41%)
Peptidase_M10 115..268 CDD:425668 66/171 (39%)
HX 298..493 CDD:238046 62/202 (31%)
Mmp17NP_035976.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
PG_binding_1 44..104 CDD:460223 25/61 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..133 8/25 (32%)
Cysteine switch. /evidence=ECO:0000250 107..114 3/6 (50%)
ZnMc_MMP 131..294 CDD:239805 66/171 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..334 7/34 (21%)
HX 333..527 CDD:238046 63/211 (30%)
Hemopexin 1 333..382 12/61 (20%)
Hemopexin 2 386..432 13/46 (28%)
Hemopexin 3 436..479 15/43 (35%)
Hemopexin 4 480..527 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.

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