DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Vtn

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_035837.1 Gene:Vtn / 22370 MGIID:98940 Length:478 Species:Mus musculus


Alignment Length:415 Identity:109/415 - (26%)
Similarity:154/415 - (37%) Gaps:172/415 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VFKLDEDDKAAIQSLYGRKTNQ---LRPTNVYPA------------------TTQRPYSP----- 290
            ||.:.|||..:...:...|.|.   ::|.|..|.                  ..::|.:|     
Mouse    67 VFTMPEDDYWSYDYVEEPKNNTNTGVQPENTSPPGDLNPRTDGTLKPTAFLDPEEQPSTPAPKVE 131

  Fly   291 ---------------PKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLI 340
                           |:.| ::.:|.....|...:...|..:||:|...|:|...:|..|||:||
Mouse   132 QQEEILRPDTTDQGTPEFP-EEELCSGKPFDAFTDLKNGSLFAFRGQYCYELDETAVRPGYPKLI 195

  Fly   341 SKGWPGLPGNIDAAFTYKN--GKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAAMV- 402
            ...| |:.|.||||||..|  ||||.|||:||||::...:|..||:.|||||:||||::|||.. 
Mouse   196 QDVW-GIEGPIDAAFTRINCQGKTYLFKGSQYWRFEDGVLDPGYPRNISEGFSGIPDNVDAAFAL 259

  Fly   403 ----WGGNGKIYFFKGSKFWRFDPAKRPPVK---------------------------------- 429
                :.|..::|||||.::|.::..::|..:                                  
Mouse   260 PAHRYSGRERVYFFKGKQYWEYEFQQQPSQEECEGSSLSAVFEHFALLQRDSWENIFELLFWGRS 324

  Fly   430 ---ASYPKPIS-NWEGVPNNLDAAL---------------------------KYT---------- 453
               |..|:.|| ||.|||..:|||:                           :|.          
Mouse   325 SDGAREPQFISRNWHGVPGKVDAAMAGRIYVTGSLSHSAQAKKQKSKRRSRKRYRSRRGRGHRRS 389

  Fly   454 ---------------------------NGY-----------------TYFFKGDKYYRFHDARFA 474
                                       |.|                 .|||.||||||.:.....
Mouse   390 QSSNSRRSSRSIWFSLFSSEESGLGTYNNYDYDMDWLVPATCEPIQSVYFFSGDKYYRVNLRTRR 454

  Fly   475 VDSATPPFPRPTAHWWFGCKNTPSS 499
            |||..||:||..|.:|.||   |:|
Mouse   455 VDSVNPPYPRSIAQYWLGC---PTS 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 5/15 (33%)
HX 298..493 CDD:238046 91/320 (28%)
VtnNP_035837.1 Somatomedin_B 22..61 CDD:460034
Cell attachment site 64..66
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..153 9/71 (13%)
HX 153..473 CDD:238046 91/320 (28%)
Hemopexin 1 157..201 14/44 (32%)
Hemopexin 2 202..249 27/46 (59%)
Hemopexin 3 250..304 13/53 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 359..395 1/35 (3%)
Heparin-binding. /evidence=ECO:0000250 366..399 1/32 (3%)
Hemopexin 4 420..473 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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