DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and zmp-5

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001333542.1 Gene:zmp-5 / 186805 WormBaseID:WBGene00010423 Length:405 Species:Caenorhabditis elegans


Alignment Length:399 Identity:138/399 - (34%)
Similarity:211/399 - (52%) Gaps:30/399 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTR---KTSGPVH 165
            ||.|||:::||.|....:||::.:..:|:......|...||||.|.|.|.|.|..   :.....:
 Worm    27 SRVKRYSIEGSYWGKSVITYRLKQPSQRMSLSQQKAVFARAFATWEEHTRLWFVAVDDEDEQKAN 91

  Fly   166 IEIKFVESEHGDGDAFDGQGGTLAHAFFPVFGGDAHFDDAELWTIGSPRGTNLFQVAAHEFGHSL 230
            |:|.|...:|.||:.|||:|..|||||||.:|||.|||:.|||:....:|.:|:.||.||.||||
 Worm    92 IDIVFAAGDHEDGEPFDGKGNILAHAFFPRYGGDVHFDEDELWSANKTKGVDLYAVAVHEIGHSL 156

  Fly   231 GLSHSDQSSALMAPFYRGFE-PVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVP 294
            ||.||....::|||||:.:. .|..|.:||.:|::.|||.           |...::..|...: 
 Worm   157 GLKHSSNHLSIMAPFYKQYTGAVMHLHQDDISAVKRLYGA-----------PVKIRKKASEHHI- 209

  Fly   295 LDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFTYKN 359
            ....:|....:|.:.....|...||:|..:::|.| :.:...|:.|::.:| ..|.::||.|.::
 Worm   210 WRSELCTKPYLDAVTTLKNGTILAFRGKMFFELKT-TRKWLLPRKINRIFP-FEGPLEAATTDRH 272

  Fly   360 GKTYFFKGTQYW--RYQGRQMDGVYPKEISEGFTGIPDHLDAAMVWGGNGKIYFFKGSKFWRFDP 422
            |..||||...||  ...|..|:| |||:||:|.|..||.::||:.:..:||.||||.|.||::  
 Worm   273 GNVYFFKKDTYWVMTKHGDMMNG-YPKKISQGLTDTPDGINAALYYHEDGKPYFFKKSYFWQY-- 334

  Fly   423 AKRPPVKASYPKPISNW---EGVPNNLDAALKYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPR 484
             .|......:|:.|.:.   :..|..:|||.:..|..::.|..:||::.......::..   |||
 Worm   335 -SRYGKHKLWPRAIVSIFENQNSPPEIDAAFQLNNTSSFLFHQNKYWKVSGDPMRIEKG---FPR 395

  Fly   485 PTAHWWFGC 493
            ..:..||.|
 Worm   396 SLSRDWFNC 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773
Peptidase_M10 115..268 CDD:278824 65/156 (42%)
ZnMc_MMP 115..268 CDD:239805 65/156 (42%)
HX 298..493 CDD:238046 61/199 (31%)
zmp-5NP_001333542.1 ZnMc_MMP 39..195 CDD:239805 65/155 (42%)
HX 213..404 CDD:238046 61/199 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I3034
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21040
Inparanoid 1 1.050 232 1.000 Inparanoid score I2171
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG49703
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 1 1.000 - - oto20283
orthoMCL 1 0.900 - - OOG6_101521
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.910

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