DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp1 and zmp-1

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_741156.1 Gene:zmp-1 / 175839 WormBaseID:WBGene00006987 Length:521 Species:Caenorhabditis elegans


Alignment Length:519 Identity:145/519 - (27%)
Similarity:228/519 - (43%) Gaps:83/519 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 YLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVG 100
            :|.::|||.:.....:|..|.|      |::..|..|||..|||||..|:::|..||||..|...
 Worm    29 FLQKYGYLTSGDNQLSSESLSD------ALKNMQRMAGLEETGELDERTIQMMERPRCGHPDVED 87

  Fly   101 TGDSRSKRYALQGSRWRVKNLTY--KISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKT-SG 162
            ...||.||||....:|:.|.:||  |......|:...|:...:.:|.:.|||..|:.....: ..
 Worm    88 HQKSRGKRYAPPQFKWKEKIITYGCKAVGTSTRISLDDLRRTMHQAASQWSELADVEIVESSVKN 152

  Fly   163 PVHIEIKFVESEHGDGDAFDGQGGTLAHAFFPVFGGDAHFDDAELWTIGS---PRGTN-LFQVAA 223
            |:.:.....|:.:.....||.:  ||||||||. .|..|.:|...:.:.:   ..|.| |:.|.|
 Worm   153 PMMVISAGRENHYPCTVRFDTK--TLAHAFFPT-NGQIHINDRVQFAMTNYTERMGANSLYSVVA 214

  Fly   224 HEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYG------------RKT---NQ 273
            ||.||:||.|||....::|  |.......:|....||..::|.||            |||   ::
 Worm   215 HEMGHALGFSHSPDIDSVM--FAYDTPRKWKFTSMDKYNMRSYYGAKASKKENEEEERKTENEDK 277

  Fly   274 LRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDT-LFNSAQGETYAFKGDKYYKLTTDSVEEGYP 337
            .|.|......|:...|      ||....:.:|:. :....:||...||....:::::|     :.
 Worm   278 RRKTEKDRGRTREHES------DDIRPNECRVENPIVVQYRGEYLIFKSQWVWRVSSD-----WK 331

  Fly   338 QLISKG------WPGLPGNIDAAFTYKNGKTYFFKGTQYWRYQGRQMDGVY-------PKEISEG 389
            :||.|.      :||||..||||.|.         |...|.:.|..:..:|       |..:|: 
 Worm   332 RLIIKAVPINQLFPGLPNPIDAAVTV---------GHNLWVFVGEMIYVIYGNHMVHAPLRLSD- 386

  Fly   390 FTGIPD-HLDAAMVWG--GNGKIYFFKGSKFWRFDPA---KRPPVKASYPKPIS-NWEGVPNNLD 447
             .||.: ::|.|..|.  ....:|.:|||::|:.|..   :|  |...|||... ||..||..:.
 Worm   387 -IGINEKYVDLAYEWHYFNPPAVYIWKGSRYWKLDEKMYHRR--VDERYPKDTDLNWARVPKGVH 448

  Fly   448 AALKYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNTPSSTGNIVEGSDNEF 511
            :|..|.. ..:..:|::.:|.:.:|...|.| ..:|:|...::..|   |.:...::..|.:.|
 Worm   449 SAFTYEK-EIHLLRGNQVFRMNSSRSVFDIA-DGYPQPLQSFFGFC---PRNEKLVLNSSSSHF 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 18/51 (35%)
Peptidase_M10 115..268 CDD:278824 47/159 (30%)
ZnMc_MMP 115..268 CDD:239805 47/159 (30%)
HX 298..493 CDD:238046 53/215 (25%)
zmp-1NP_741156.1 PG_binding_1 28..75 CDD:307564 18/51 (35%)
ZnMc_MMP 102..257 CDD:239805 47/159 (30%)
HX 308..483 CDD:238046 50/194 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.