DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp8

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_032637.3 Gene:Mmp8 / 17394 MGIID:1202395 Length:465 Species:Mus musculus


Alignment Length:481 Identity:186/481 - (38%)
Similarity:243/481 - (50%) Gaps:71/481 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 AEIYLSQFGYLPA----SARNPASSGLHDQRTWVS-AIEEFQSFAGLNITGELDAETMKLMSLPR 92
            ||.||.:|..||:    |:||         .|.|: .::|.|.|..|..||:|||.||.:|.:||
Mouse    35 AENYLRKFYNLPSNQFRSSRN---------ATMVAEKLKEMQRFFSLAETGKLDAATMGIMEMPR 90

  Fly    93 CGVRDRVGTGDSRSKRYAL-QGS-RWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLT 155
            |||.|   :||     :.| .|| :|...||||:|..:..:|.|.:|...|.:||.|||..:.||
Mouse    91 CGVPD---SGD-----FLLTPGSPKWTHTNLTYRIINHTPQLSRAEVKTAIEKAFHVWSVASPLT 147

  Fly   156 FTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP--VFGGDAHFDDAELWTIGSPRGTNL 218
            ||....|...|.|.||..:|||...|||..|.|||||.|  ..|||||||..|.||..| :..||
Mouse   148 FTEILQGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDSEETWTQDS-KNYNL 211

  Fly   219 FQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEP-VFKLDEDDKAAIQSLYGRKTNQLRPTNVYPA 282
            |.|||||||||||||||....|||.|.|...|| .:.|.:||...||::||...|.::||.  |:
Mouse   212 FLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPIQPTG--PS 274

  Fly   283 TTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQL-------I 340
            |       ||. .|..:..|:.     .:.:||.|.|| |||:       ...:|||       |
Mouse   275 T-------PKA-CDPHLRFDAT-----TTLRGEIYFFK-DKYF-------WRRHPQLRTVDLNFI 318

  Fly   341 SKGWPGLPGNIDAAF-TYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISE-GFTGIPDHLDAAMVW 403
            |..||.||..:.||: .:.....:.|||.|||...|..:...||::||. ||......:|||:.:
Mouse   319 SLFWPFLPNGLQAAYEDFDRDLVFLFKGRQYWALSGYDLQQGYPRDISNYGFPRSVQAIDAAVSY 383

  Fly   404 GGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPI-SNWEGVPNNLDAALKYTNGYTYFFKGDKYYR 467
              |||.|||..::.||:|..:| .:...|||.| |.:.||...:||.. ..:.:..||.|.:|:.
Mouse   384 --NGKTYFFINNQCWRYDNQRR-SMDPGYPKSIPSMFPGVNCRVDAVF-LQDSFFLFFSGPQYFA 444

  Fly   468 FHDARFAVDSATPPFPRPTAHWWFGC 493
            |:.....|....      .::.|..|
Mouse   445 FNFVSHRVTRVA------RSNLWLNC 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 23/59 (39%)
Peptidase_M10 115..268 CDD:278824 78/155 (50%)
ZnMc_MMP 115..268 CDD:239805 78/155 (50%)
HX 298..493 CDD:238046 62/204 (30%)
Mmp8NP_032637.3 PG_binding_1 31..86 CDD:279773 23/59 (39%)
Cysteine switch. /evidence=ECO:0000250 89..96 6/9 (67%)
Peptidase_M10 107..262 CDD:278824 78/155 (50%)
ZnMc_MMP 107..262 CDD:239805 78/155 (50%)
HX 276..464 CDD:238046 65/211 (31%)
Hemopexin 1 276..325 19/62 (31%)
Hemopexin 2 326..372 16/45 (36%)
Hemopexin 3 374..420 18/48 (38%)
Hemopexin 4 421..464 9/49 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838336
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.880

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