DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp24

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_034938.3 Gene:Mmp24 / 17391 MGIID:1341867 Length:618 Species:Mus musculus


Alignment Length:609 Identity:213/609 - (34%)
Similarity:301/609 - (49%) Gaps:100/609 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFSIMAAAQSAPVSTTTQAEIYLSQFGY-LPASARNPASSGLHDQRTWVSAIEEFQSFAGLNITG 78
            |.:...|.:.|........:.:|..:|| ||..:|   :|.||..:...||:...|.|.|:.:||
Mouse    36 LAAAAGAGKPAGADAPFAGQNWLKSYGYLLPYESR---ASALHSGKALQSAVSTMQQFYGIPVTG 97

  Fly    79 ELDAETMKLMSLPRCGVRDRVG-TGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIG 142
            .||..|::.|..|||||.|... :...|:|||||.|.:||.|::||.|..|..::..:|....|.
Mouse    98 VLDQTTIEWMKKPRCGVPDHPHLSRRRRNKRYALTGQKWRQKHITYSIHNYTPKVGELDTRKAIR 162

  Fly   143 RAFAVWSEDTDLTFTRKTSGPVHIEIK-----------FVESEHGDGDAFDGQGGTLAHAFF--P 194
            :||.||.:.|.|||...   |.| |||           |....|||...|||:||.||||:|  |
Mouse   163 QAFDVWQKVTPLTFEEV---PYH-EIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAHAYFPGP 223

  Fly   195 VFGGDAHFDDAELWTIGSPR--GTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEP-VFKLD 256
            ..|||.|||..|.||:|:..  |.:||.||.||.||:|||.||:..||:|||||:..|. .|||.
Mouse   224 GIGGDTHFDSDEPWTLGNANHDGNDLFLVAVHELGHALGLEHSNDPSAIMAPFYQYMETHNFKLP 288

  Fly   257 EDDKAAIQSLYGRKTNQLRPTNVYP--------ATTQRPYS----PPKVPLDD---------SIC 300
            :||...||.:||.....|.||...|        :.::|.:.    ||:.||.|         :||
Mouse   289 QDDLQGIQKIYGPPAEPLEPTRPLPTLPVRRIHSPSERKHERHPRPPRPPLGDRPSTPGAKPNIC 353

  Fly   301 KDSKVDTLFNSA---QGETYAFKGDKYYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFTYKNGKT 362
                 |..||:.   :||.:.||...:::|..:.|:||||..|.:.|.|||..||||:...:|:.
Mouse   354 -----DGNFNTVALFRGEMFVFKDRWFWRLRNNRVQEGYPMQIEQFWKGLPARIDAAYERADGRF 413

  Fly   363 YFFKGTQYWRYQGRQMDGVYPKEISEGFTGIP-DHLDAAMVWGGNGKIYFFKGSKFWRFDPAKRP 426
            .||||.:||.::...::..||..:.|..:.:| :.:|.|:.|...||.|||||.::||:...:| 
Mouse   414 VFFKGDKYWVFKEVTVEPGYPHSLGELGSCLPREGIDTALRWEPVGKTYFFKGERYWRYSEERR- 477

  Fly   427 PVKASYPKPISNWEGVPNNLDAALKYTNG-YTYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWW 490
            .....|||||:.|:|:|.....|.....| ||||:||..|::|.:.:.:|:   |.:||.....|
Mouse   478 ATDPGYPKPITVWKGIPQAPQGAFISKEGYYTYFYKGRDYWKFDNQKLSVE---PGYPRNILRDW 539

  Fly   491 FGCKNTPSSTGNIVEGSDNEFEQHSMIPHADDGNGDDFDAAVGDHQSNDEPIVPEVAERTGNGAM 555
            .|||.           .:.|..:...:|.      ||.|..|   ..:|.|              
Mouse   540 MGCKQ-----------KEVERRKERRLPQ------DDVDIMV---TIDDVP-------------- 570

  Fly   556 SQSKLTSSSAVSTVI-TTILMCLV 578
                 .|.:||:.|: .|:.:||:
Mouse   571 -----GSVNAVAVVVPCTLSLCLL 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223 19/56 (34%)
Peptidase_M10 115..268 CDD:425668 76/168 (45%)
HX 298..493 CDD:238046 71/199 (36%)
Mmp24NP_034938.3 PG_binding_1 55..107 CDD:460223 19/54 (35%)
Cysteine switch. /evidence=ECO:0000250 110..117 5/6 (83%)
Peptidase_M10 135..300 CDD:425668 76/168 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 296..352 13/55 (24%)
HX 350..542 CDD:238046 71/200 (36%)
Hemopexin 1 350..398 17/52 (33%)
Hemopexin 2 399..444 15/44 (34%)
Hemopexin 3 446..494 20/48 (42%)
Hemopexin 4 495..542 15/49 (31%)
DUF3377 548..618 CDD:463374 15/70 (21%)
PDZ-binding 616..618
Blue background indicates that the domain is not in the aligned region.

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