DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and Mmp11

DIOPT Version :10

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_032632.1 Gene:Mmp11 / 17385 MGIID:97008 Length:492 Species:Mus musculus


Alignment Length:429 Identity:176/429 - (41%)
Similarity:231/429 - (53%) Gaps:41/429 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 RCGVRD--RVGTGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDL 154
            ||||.|  .|....:|.||:.|.|.||...:|||:|.::|.:|.|..|...:..|..||||.|.|
Mouse    83 RCGVPDLPDVLNARNRQKRFVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPL 147

  Fly   155 TFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFPVF--GGDAHFDDAELWTIGSPRGTN 217
            |||....|...|.|.|....|||...|||.||.|||||||..  .||.|||..|.||||..:||:
Mouse   148 TFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGTD 212

  Fly   218 LFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPA 282
            |.|||||||||.|||.|:..:.|||:|||. |.....|..||:..||.||||.  |:.||:..|.
Mouse   213 LLQVAAHEFGHVLGLQHTTAAKALMSPFYT-FRYPLSLSPDDRRGIQHLYGRP--QMAPTSPAPT 274

  Fly   283 TTQR------------PYSPPKVPLDDSICKDS--KVDTLFNSAQGETYAFKGDKYYKLTTDSVE 333
            .:.:            |.:||      .:|:.|  .|.|:    :||.:.||....::|.:..::
Mouse   275 LSSQAGTDTNEIALLEPETPP------DVCETSFDAVSTI----RGELFFFKAGFVWRLRSGRLQ 329

  Fly   334 EGYPQLISKGWPGLPGNIDAAFTYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISE-GFTGIPDHL 397
            .|||.|.|:.|.|||..:||||....|:.:||:|.|||.|.| :...:.|..:|: |..|.|.| 
Mouse   330 PGYPALASRHWQGLPSPVDAAFEDAQGQIWFFQGAQYWVYDG-EKPVLGPAPLSKLGLQGSPVH- 392

  Fly   398 DAAMVWG-GNGKIYFFKGSKFWRFDPAKRPPVKASYPKPISNWEGVPNNLDAALKYTNGYTYFFK 461
             ||:||| ...|||||:|..:|||.| :...|....|:..::|.|||:.:|||.:...||.||.:
Mouse   393 -AALVWGPEKNKIYFFRGGDYWRFHP-RTQRVDNPVPRRSTDWRGVPSEIDAAFQDAEGYAYFLR 455

  Fly   462 GDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNTPSST 500
            |..|::|...:..|   ...||||....:|.|.. |::|
Mouse   456 GHLYWKFDPVKVKV---LEGFPRPVGPDFFDCAE-PANT 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:460223
Peptidase_M10 115..268 CDD:425668 78/154 (51%)
HX 298..493 CDD:238046 74/198 (37%)
Mmp11NP_032632.1 Cysteine switch. /evidence=ECO:0000250 82..89 4/5 (80%)
Peptidase_M10 108..262 CDD:425668 78/154 (51%)
HX 295..484 CDD:238046 75/205 (37%)
Hemopexin 1 295..343 16/57 (28%)
Hemopexin 2 344..386 16/42 (38%)
Hemopexin 3 388..436 21/50 (42%)
Hemopexin 4 437..484 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.

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