DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mmp1 and Mmp12

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_032631.3 Gene:Mmp12 / 17381 MGIID:97005 Length:473 Species:Mus musculus


Alignment Length:506 Identity:185/506 - (36%)
Similarity:255/506 - (50%) Gaps:58/506 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CQSSVFIVVGTLFSIMAAAQSAPVSTTTQAEIYLSQFGYLPASARNPASSGLHDQRTWVSAIEEF 68
            |.....:::  :|..::|..:||::.:..||.|||:| |.....|.|.:....::......::|.
Mouse    10 CTMKFLMMI--VFLQVSACGAAPMNDSEFAEWYLSRF-YDYGKDRIPMTKTKTNRNFLKEKLQEM 71

  Fly    69 QSFAGLNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGSRWRVKNLTYKISKYPKRLK 133
            |.|.||..||:||..|:.:|.:|||||      .|.:..|...|.|||..:.|||:|..|...:|
Mouse    72 QQFFGLEATGQLDNSTLAIMHIPRCGV------PDVQHLRAVPQRSRWMKRYLTYRIYNYTPDMK 130

  Fly   134 RVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFPVFG- 197
            |.|||....:||.|||:.|.|.|.:.......|.|.|....|||.:.|||:||||||||:|..| 
Mouse   131 REDVDYIFQKAFQVWSDVTPLRFRKLHKDEADIMILFAFGAHGDFNYFDGKGGTLAHAFYPGPGI 195

  Fly   198 -GDAHFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEP-VFKLDEDDK 260
             ||||||:||.|| .|.:|||||.||.||.||||||.||:...::|.|.||...| .|:|..||.
Mouse   196 QGDAHFDEAETWT-KSFQGTNLFLVAVHELGHSLGLQHSNNPKSIMYPTYRYLNPSTFRLSADDI 259

  Fly   261 AAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYY 325
            ..||||||        ..|.|.:..:|.|||......|:..|: |.|:     ||...|..|.::
Mouse   260 RNIQSLYG--------APVKPPSLTKPSSPPSTFCHQSLSFDA-VTTV-----GEKIFFFKDWFF 310

  Fly   326 --KLTTDSVEEGYPQL----ISKGWPGLPGNIDAAFTYKN-GKTYFFKGTQYWRYQGRQMDGVYP 383
              ||      .|.|..    ||..||.:|..|.||:..:: .:.:.||..:||.......:..||
Mouse   311 WWKL------PGSPATNITSISSIWPSIPSGIQAAYEIESRNQLFLFKDEKYWLINNLVPEPHYP 369

  Fly   384 KEI-SEGFTGIPDHLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPIS-NWEGVPNNL 446
            :.| |.||:.....:|||:......|:|||....:||:| .::..:..:|||.|| ::.|:...:
Mouse   370 RSIYSLGFSASVKKVDAAVFDPLRQKVYFFVDKHYWRYD-VRQELMDPAYPKLISTHFPGIKPKI 433

  Fly   447 DAALKYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPRPT----AHWWFGC 493
            ||.|.:...| |.|:| .|...:|         |.|.|.|    :..||||
Mouse   434 DAVLYFKRHY-YIFQG-AYQLEYD---------PLFRRVTKTLKSTSWFGC 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 19/55 (35%)
Peptidase_M10 115..268 CDD:278824 80/155 (52%)
ZnMc_MMP 115..268 CDD:239805 80/155 (52%)
HX 298..493 CDD:238046 61/207 (29%)
Mmp12NP_032631.3 PG_binding_1 31..91 CDD:279773 19/60 (32%)
Cysteine switch. /evidence=ECO:0000250 94..101 5/12 (42%)
Peptidase_M10 112..267 CDD:278824 80/155 (52%)
ZnMc_MMP 112..267 CDD:239805 80/155 (52%)
HX 289..473 CDD:238046 61/207 (29%)
Hemopexin 1 289..332 16/54 (30%)
Hemopexin 2 333..379 14/45 (31%)
Hemopexin 3 381..429 15/48 (31%)
Hemopexin 4 430..473 15/53 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167838338
Domainoid 1 1.000 149 1.000 Domainoid score I4397
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.850

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