DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp9.2

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_002932554.2 Gene:mmp9.2 / 100494738 XenbaseID:XB-GENE-981900 Length:684 Species:Xenopus tropicalis


Alignment Length:692 Identity:184/692 - (26%)
Similarity:258/692 - (37%) Gaps:251/692 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VFIVVGTLFSIMAAAQSA---PVSTTTQAEI------------YLSQFGYLPASARNPASSGLHD 57
            :.|:|..|.|:..:|.:|   |||.....||            ||.:|||||.. :.|::..:..
 Frog     6 ILILVAILCSMGHSAPTASKSPVSVIFPGEIRSNMTSVEVAEWYLVKFGYLPLQ-QGPSNHHVSI 69

  Fly    58 QRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRD--RVGTGDSRSKRYALQGSRWRVKN 120
            ::    |:.:.|...||.:||.|||||::.|..|||||.|  ...|.|...|        |...:
 Frog    70 KK----ALSQMQRKLGLKVTGNLDAETLEAMKSPRCGVPDIGNFNTFDGELK--------WDHHD 122

  Fly   121 LTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQG 185
            :||:|..|...|....:|....|||.|||:.|.|||||..:|...|.|.|...:|||...|||:.
 Frog   123 ITYRILNYSPDLDPDVIDDAFARAFKVWSDVTPLTFTRIYNGEPDINILFGTEDHGDPYPFDGKD 187

  Fly   186 GTLAHAFFPVFG--GDAHFDDAELWTIGS------------------------------------ 212
            |.||||:.|..|  |||||||.|.||:|:                                    
 Frog   188 GLLAHAYPPGPGMQGDAHFDDDEFWTLGTGTVVKTRFGNAGGAQCHFPFVFDGQSYNSCTSDGRS 252

  Fly   213 ----------------------------------------------------------------- 212
                                                                             
 Frog   253 DGLPWCSTTPNFDQDKKYGFCPSELLYTYGGNSDGEPCTFPFIFDGVSYDGCTKDGRQDGYRWCG 317

  Fly   213 ----------------------------------------------------------------- 212
                                                                             
 Frog   318 TTANYDQDHKYGFCPNRDISVIGGNSQGDPCVFPFTFLGKRYNSCTSEGRSDRKLWCATTSSYDR 382

  Fly   213 --------PRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYG- 268
                    .:|.:||.||||||||:|||.|||...|||.|.| .:...|:|.|||...||.||| 
 Frog   383 DKKWGFCPDQGYSLFLVAAHEFGHALGLEHSDVKDALMYPMY-SYVKDFQLHEDDVRGIQYLYGS 446

  Fly   269 -------RKTNQLRPTNVYPA-----TTQRPYSPPKVPLDDSI------CKDSKVDTLFNSAQGE 315
                   :.:::..||...|:     ||....:|...||..|:      ||....|.: ...||.
 Frog   447 GPHPAPPKPSDKPIPTTTTPSTRTPTTTPSTRAPTTTPLTPSVNPALDACKVKMFDAI-TELQGA 510

  Fly   316 TYAFKGDKYYKLTT---DSVEEGYPQLISKGWPGLPGNIDAAF---TYKNGKTYFFKGTQYWRYQ 374
            .:.||...|:.:|:   ::::.  |:.||..||.||..||.||   |.||  .:||.|.::|:|.
 Frog   511 LHFFKDGLYWSVTSKNKNALQS--PRNISDTWPALPTKIDTAFQDPTSKN--IFFFSGRKFWQYT 571

  Fly   375 GRQMDGVYPKEISEGFTGIPDHLDAAMVWGG----NGKIYFFKGSKFWRFDPAKRPPVKASYPKP 435
            |:.:.|  |:.|.:  .|:...::..|  |.    |||...|.|.::||.: .|...|...||:.
 Frog   572 GKSVLG--PRSIEK--LGLSKDVEGIM--GSFARDNGKALLFNGERYWRLN-VKTLTVDKGYPRL 629

  Fly   436 IS-NWEGVPNNLDAALKYTNGYTYFFKGDKYYRFHDARFAVD 476
            .. ::.|||::......|..  .|:|..|:::....:|..||
 Frog   630 TDVDYAGVPSDSHDVFLYQG--KYYFCQDRFFWRMTSRKQVD 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 21/67 (31%)
Peptidase_M10 115..268 CDD:278824 77/328 (23%)
ZnMc_MMP 115..268 CDD:239805 77/328 (23%)
HX 298..493 CDD:238046 57/196 (29%)
mmp9.2XP_002932554.2 PG_binding_1 39..96 CDD:396175 19/61 (31%)
Peptidase_M10 117..445 CDD:395334 78/336 (23%)
FN2 225..273 CDD:128373 0/47 (0%)
FN2 283..331 CDD:128373 0/47 (0%)
FN2 341..389 CDD:128373 0/47 (0%)
HX 494..681 CDD:238046 56/190 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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