DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp15b

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_021323108.1 Gene:mmp15b / 100332426 ZFINID:ZDB-GENE-070817-6 Length:655 Species:Danio rerio


Alignment Length:626 Identity:212/626 - (33%)
Similarity:307/626 - (49%) Gaps:81/626 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFSIMAAAQSAPV--STTTQAEIYLSQFGYLPASARNPASSGLHDQRTWVSAIEEFQSFAGLNIT 77
            :||::.....|..  ..|...|.:|..:||||.::|.  .|.:...:...:||.:.|.|.||.||
Zfish    19 VFSLLLLLMGARTFGDETFSGESWLRMYGYLPQASRQ--MSTMRSAQILSNAISDMQRFYGLEIT 81

  Fly    78 GELDAETMKLMSLPRCGVRDRVGT---GDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDA 139
            ||:|..|::.|..|||||.|:.|.   .:.|.|||||.|.:|...::|:.|..|..::...:...
Zfish    82 GEMDPGTIEAMKRPRCGVPDKFGAQIKTNVRRKRYALTGHKWDKTHITFSIQNYTPKIGEYNSYE 146

  Fly   140 EIGRAFAVWSEDTDLTFTRKTSGPVH-----------IEIKFVESEHGDGDAFDGQGGTLAHAFF 193
            .|.|||.||.:.|.|||...   |.|           |.|.|....|||...|||:||.||||:|
Zfish   147 AIRRAFRVWEKVTPLTFDEI---PFHEVKYGRRKEPDIMIFFASGFHGDSSPFDGEGGFLAHAYF 208

  Fly   194 --PVFGGDAHFDDAELWTIGSP--RGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPV-F 253
              |..|||.|||..|.|||||.  :|.:||.||.||.||:|||.||:...|:|||||:..:.. |
Zfish   209 PGPGMGGDTHFDSDEPWTIGSQNLQGNDLFLVAVHELGHALGLEHSNNPLAIMAPFYQWMDTENF 273

  Fly   254 KLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQR------------PYSPPKVP------------ 294
            :|.|||...:|.:||..::.  ||...|..|.|            |.|||..|            
Zfish   274 ELPEDDLRGVQQIYGPPSSS--PTQALPTVTPRRPAHPDPRAPNPPKSPPGAPPRRPDKPRTTDR 336

  Fly   295 ---LDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLISKGWPGLPGNIDAAFT 356
               ...:|| :...||: ...:||.:.|||..::::..:.|.:.||..|...|.||||:||||:.
Zfish   337 PDHYGPNIC-EGNFDTV-TMLRGEMFVFKGRWFWRVRRNRVLDNYPMPIGHFWRGLPGDIDAAYE 399

  Fly   357 YKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIP-DHLDAAMVWGGNGKIYFFKGSKFWRF 420
            ..:|:..||||:|||.::...::..||:|:.:....|| |.:|.|:.|..:|..|||||..:|||
Zfish   400 RHDGRFVFFKGSQYWLFREANLESGYPQELMDYGRDIPYDKIDTAIWWEPSGFTYFFKGDWYWRF 464

  Fly   421 DPAKRPPVKASYPKPISNW-EGVPNNLDAALKYTNG-YTYFFKGDKYYRFHDARFAVDSATPPFP 483
            :...| .....||||||.| ..||::...|....:| ||||:||.||::|.:.|.   ::.|.:|
Zfish   465 NEQDR-AADQDYPKPISVWGTSVPSSPKGAFLSDDGAYTYFYKGAKYWKFDNHRM---TSEPGYP 525

  Fly   484 RPTAHWWFGCKNTPSSTGNIVEGSDNEFEQHSMIPHADDGNGD-------DFDAAVGDHQSNDEP 541
            :.....:.||      ..::....|.:.:|....|.....|.|       |.|.......:||..
Zfish   526 KSILRDFMGC------NVDLDPDRDTDVDQGRKWPDRPPFNPDAGRDKDKDKDKDKERDNTNDAD 584

  Fly   542 IVPEVAERTGNG----AMSQSKLTSSSAVSTVITTILMCLV 578
            ...|..|:|...    .:.:::.|.:..:.||...:::|::
Zfish   585 SKEETEEKTNEVDVVLKIDETERTMNIIMVTVPLVLVLCIL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 20/55 (36%)
Peptidase_M10 115..268 CDD:278824 71/168 (42%)
ZnMc_MMP 115..268 CDD:239805 71/168 (42%)
HX 298..493 CDD:238046 72/197 (37%)
mmp15bXP_021323108.1 PG_binding_1 40..92 CDD:307564 20/53 (38%)
Peptidase_M10 122..288 CDD:306839 71/168 (42%)
HX 342..535 CDD:238046 72/198 (36%)
DUF3377 596..655 CDD:314687 4/30 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 336 1.000 Inparanoid score I2367
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm26047
orthoMCL 1 0.900 - - OOG6_101521
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3504
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.900

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