DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp13b

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_001345507.1 Gene:mmp13b / 100006896 ZFINID:ZDB-GENE-030131-6152 Length:461 Species:Danio rerio


Alignment Length:480 Identity:165/480 - (34%)
Similarity:236/480 - (49%) Gaps:55/480 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LFSIMAAAQSA-PVSTTTQ-----AEIYLSQFGYLPASARNPA-SSGLHDQRTWVSAIEEFQSFA 72
            |..::||..|| |:||..:     |:.||.:|..:||..:.|. ||.|..|:     |.|.|.|.
Zfish     7 LLLVIAAYSSAKPISTEEKDKAVLAKKYLQRFYGMPAGLQRPGKSSDLMQQK-----IREMQEFF 66

  Fly    73 GLNITGELDAETMKLMSLPRCGVRDRVGTGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDV 137
            .|.:||:||.:|::||.:.||||      .|.....:..:..:|:..|:|::|..|...||:..|
Zfish    67 KLEVTGKLDDKTVELMEMARCGV------PDVAEYNHFPRDLKWKTTNVTFRILNYTPDLKKKVV 125

  Fly   138 DAEIGRAFAVWSEDTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFP--VFGGDA 200
            |..:.:|..|||:.|.|.||:...|...|.|.|...||||.:.|||..|.||||:.|  ..|||.
Zfish   126 DRAVRKALNVWSKVTPLRFTKTFDGTADIMISFGTKEHGDFNPFDGPEGLLAHAYPPGIGIGGDT 190

  Fly   201 HFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFEPVFKLDEDDKAAIQS 265
            |||:.|.|| ......|||.||||||||:||::||....:||.|.| .:...|.|.|||...|||
Zfish   191 HFDEDETWT-EDYHAFNLFLVAAHEFGHALGMAHSSDPGSLMYPVY-SYAKGFPLSEDDIEGIQS 253

  Fly   266 LYGRKTN--QLRPTNVYPATTQRPYSPPKVPLDDSICKDSKVDTLFNSAQGETYAFKGDKYYKLT 328
            |||...:  :.:|         :|.:|.|  .|..:..|:     ....:|||..|| |::|...
Zfish   254 LYGENPDHEKFKP---------KPIAPEK--CDPELSFDA-----ITELRGETIIFK-DRFYWRL 301

  Fly   329 TDSVEEGYPQLISKGWPGLPGNIDAAFTYKNGK---TYFFKGTQYWRYQGRQMDGVYPKEISEGF 390
            ..::.|....||...||.:|..:|||  |:|.:   ...|.|.:.|...|..:...|||.|.:  
Zfish   302 HPNMPEPEQTLIKNTWPEIPNKVDAA--YENPERDVVIIFSGIKMWALNGYTLVDGYPKYIHK-- 362

  Fly   391 TGIPD---HLDAAMVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPI-SNWEGVPNNLDAALK 451
            .|:|.   .:|||:.....||...|...::|.|| .:...:...||:.| .::.|:.:.:||| .
Zfish   363 LGLPKTVRKIDAAVNIRDTGKTLLFVDEEYWSFD-EQTGTMDTGYPRSIEDDFPGIGDEVDAA-A 425

  Fly   452 YTNGYTYFFKGDKYYRF-HDARFAV 475
            |..||...:.....:.: :.||..|
Zfish   426 YHYGYLNLYHEHTQFEYSYSARKVV 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 21/61 (34%)
Peptidase_M10 115..268 CDD:278824 71/154 (46%)
ZnMc_MMP 115..268 CDD:239805 71/154 (46%)
HX 298..493 CDD:238046 51/186 (27%)
mmp13bXP_001345507.1 PG_binding_1 29..82 CDD:279773 21/57 (37%)
Peptidase_M10 103..256 CDD:278824 71/154 (46%)
ZnMc_MMP 103..256 CDD:239805 71/154 (46%)
HX 271..461 CDD:238046 54/194 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 1 1.000 - - FOG0000127
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X44
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.020

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