DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mmp1 and mmp21

DIOPT Version :9

Sequence 1:NP_726473.2 Gene:Mmp1 / 37949 FlyBaseID:FBgn0035049 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001304682.1 Gene:mmp21 / 100003089 ZFINID:ZDB-GENE-100226-2 Length:599 Species:Danio rerio


Alignment Length:617 Identity:179/617 - (29%)
Similarity:247/617 - (40%) Gaps:157/617 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QSSVFIVVGTLFS-------IMAAAQSAPVSTTTQAEIYLSQFGYLPASARNPA----SSG---- 54
            |:.:||....:|.       :....|:..::.|..|:.:||::|::.|:....:    |||    
Zfish    12 QTFIFITAEKIFHSRDHSDVLNNIHQAELITDTDTAQRFLSKYGFIKAAGSEESQLSESSGDLDF 76

  Fly    55 -----LHDQRT----------WVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRD------- 97
                 ||:..|          :|||:.:||..:.|.:||..|..|...|:.|||||.|       
Zfish    77 SLSLDLHEGGTTSGSSSSDLQFVSALRDFQRLSDLPVTGVFDDATKAAMNKPRCGVMDDDQELKD 141

  Fly    98 -----------RVGTGDS---------RSKRY----------------------ALQGS--RWRV 118
                       |..|..|         |.||:                      |...|  :||:
Zfish   142 VTGSNSTRNHIRTSTNTSHNHEHQAPVRKKRHLSALLKNTKLQKRDVSEWTGHMAFSKSVLKWRL 206

  Fly   119 ------KNLTYKISKYPKRLKRVDVDAEIGRAFAVWSEDTDLTFTRKTSGP---VHIEIKFVESE 174
                  ..|:.:..||..||           ||.:|||.:.|.|......|   :.|.:.|....
Zfish   207 IGEGYSSQLSIQEQKYIFRL-----------AFRMWSEISPLQFIEDLHSPLGNIDIRLGFGTGR 260

  Fly   175 H-GDGDAFDGQGGTLAHAFFPVFGGDAHFDDAELWTI---GSPRGTNLFQVAAHEFGHSLGLSHS 235
            | |....|||.|...|||:|.   ||.||||.|.:|:   ||  |.:|.:||.||.||.|||.|.
Zfish   261 HLGCSQRFDGAGREFAHAWFL---GDIHFDDDEHFTVPNTGS--GISLLKVAVHEIGHVLGLPHI 320

  Fly   236 DQSSALMAPFYRGFEPVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSIC 300
            .:..::|.|.|...:..|::|..|:.:||.|||....:......:....|.||            
Zfish   321 YRPGSIMQPSYLPQDAGFEIDWMDRKSIQRLYGVCMGRFSTVFDWIRKEQTPY------------ 373

  Fly   301 KDSKVDTLFNSAQGETYAFKGDKY--YKLTTDSVEEGYPQLISKGWPGLP-GNIDAAFTYKNGKT 362
              .:|...||     ||..:...|  |:...:....|.|..:..||.||| |.:||.....|.||
Zfish   374 --GEVVVRFN-----TYFMRDGLYWLYENRNNRTRYGDPVAVQVGWHGLPSGGVDAYVHVWNRKT 431

  Fly   363 ---YFFKGTQYWRYQGRQ-------MDG-VYPKEISEGFTGIPDHLDAAMVWGGNGKIYFFKGSK 416
               |||||.|||||....       .|| .||:.|||.|.|:...||.|.....:..|||||||:
Zfish   432 DAVYFFKGMQYWRYDSENDHVFSHAPDGRSYPRLISEDFPGVSGPLDTAYYDRRDAHIYFFKGSQ 496

  Fly   417 FWRFDPAKRPPVKAS-------YPKPISNWEGVPNNLDAA-LKYTNGYTYFFKGDKYYRFHDARF 473
            .:|||...|....:|       :|..:|....| .:|||| ..||:...:..||..::|....:.
Zfish   497 VFRFDVRMRRLASSSPQEMTEVFPAIVSGDHPV-RSLDAAYFSYTHNTVFLLKGSLFWRVLSGKE 560

  Fly   474 AVDSATPPFPRPTAH-----WWFGCKNTPSST 500
            ....|..|.....||     .||...:..||:
Zfish   561 RRRRAFLPMNGLLAHRRVHEQWFDICDVHSSS 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mmp1NP_726473.2 PG_binding_1 32..88 CDD:279773 21/78 (27%)
Peptidase_M10 115..268 CDD:278824 58/165 (35%)
ZnMc_MMP 115..268 CDD:239805 58/165 (35%)
HX 298..493 CDD:238046 72/221 (33%)
mmp21NP_001304682.1 PG_binding_1 <99..125 CDD:279773 10/25 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 141..170 3/28 (11%)
Peptidase_M10 196..353 CDD:278824 60/172 (35%)
ZnMc_MMP 197..353 CDD:239805 59/171 (35%)
Hemopexin 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU01011 356..415 14/77 (18%)
HX 382..564 CDD:295316 63/182 (35%)
Hemopexin 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01011 417..473 24/55 (44%)
Hemopexin 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU01011 474..522 16/47 (34%)
Hemopexin 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU01011 529..585 16/56 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1075463at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10201
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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