DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and IST3

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_012270.1 Gene:IST3 / 854821 SGDID:S000001444 Length:148 Species:Saccharomyces cerevisiae


Alignment Length:174 Identity:39/174 - (22%)
Similarity:78/174 - (44%) Gaps:33/174 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREH 67
            :.|::.:.|...:|      |:......::.:         .|..|.:.:.|::.:.||..:...
Yeast     1 MNKIQQINDKELQS------GILSPHQSWHNE---------YKDNAYIYIGNLNRELTEGDILTV 50

  Fly    68 FGQWGTLEDVHILKRGD--GKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYV 130
            |.::|...|| ||.|.:  |:..|.|:::||.......|:.|.||.::.||.:.:|       :.
Yeast    51 FSEYGVPVDV-ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKID-------HT 107

  Fly   131 SKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAE---VGKEDE 171
            ...||   ...:|....||||.  ::::..:::||   :.|:|:
Yeast   108 FYRPK---RSLQKYYEAVKEEL--DRDIVSKNNAEKLILAKKDQ 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 22/76 (29%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
IST3NP_012270.1 RRM_ist3_like 22..109 CDD:409845 24/103 (23%)
Blue background indicates that the domain is not in the aligned region.

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