DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and AT5G55670

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_200378.1 Gene:AT5G55670 / 835661 AraportID:AT5G55670 Length:710 Species:Arabidopsis thaliana


Alignment Length:402 Identity:73/402 - (18%)
Similarity:133/402 - (33%) Gaps:100/402 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 DESSGEDSDAESGEDEEDSGESED----EENDEDHKE----------------------NKDELK 208
            ||..|.|...:..::|..|..::|    ||.|:|:::                      :::|.|
plant     2 DEGDGRDQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKKNDEAGSRNEEK 66

  Fly   209 SKLDIKNVKREKQISNDVQEGCTV---FIKNVPFDAE----------DADLRKACRKFGL--VSY 258
            .|::::...|.:.:..:.:...::   ..::|..:||          ..|:..|...:|.  |..
plant    67 EKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGTDVVVASSGYGAQEVKV 131

  Fly   259 AIINRQAVSGHSKGT-AFVKFKAKESADLC--LQAGTEFKLMDEVLDPHPALSREE--MKSKQSQ 318
            :.::::...|...|| ..::.:..::::..  |:|.....:...:|.|.|.|...|  |:.....
plant   132 SDVSQEIPGGIGTGTGGGLRVELGQASNRANDLEAPRGNNISQGLLPPPPVLGNNENLMRPVMGN 196

  Fly   319 ENKKDDAKDSRNLY-----LAREGLIMAGAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRN 378
            .|.........|:.     :|..|::..|.....|..|                      |:...
plant   197 VNGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGGGA----------------------FLFVG 239

  Fly   379 RLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAA 443
            .|.........:.|..|..|             ::|.|...|...|||||:..:.|.....|.|.
plant   240 DLHWWTTDAELEAELCKYGA-------------VKEVKFFDEKASGKSKGYCQVEFYDPVAASAC 291

  Fly   444 LRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERRQQKRNGQE 508
            ...||..|    ...||.|.......:|.::.|.:..|:          ||.:....|.||.|..
plant   292 KDALNGYP----FNGRPCVVEYASPYSVKRMGEAQVNRT----------QQAQSVIAQAKRGGPA 342

  Fly   509 TKTPVPQADNKS 520
            .....|...|.:
plant   343 DPPSKPLVANNN 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 17/102 (17%)
RRM4_RBM28_like 379..468 CDD:409850 21/88 (24%)
PTZ00121 <473..>622 CDD:173412 10/48 (21%)
AT5G55670NP_200378.1 RRM_CFIm68_CFIm59 236..309 CDD:409807 21/89 (24%)
SF-CC1 562..>674 CDD:273721
Blue background indicates that the domain is not in the aligned region.

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