Protein Alignment CG4806 and PAB2

DIOPT Version :9

• Sequence 1: NP_611955.2
• Gene: CG4806 / 37948
• FlyBaseID: FBgn0260456
• Length: 657
• Species: Drosophila melanogaster
• Sequence 2: NP_195137.5
• Gene: PAB2 / 829557
• AraportID: AT4G34110
• Length: 629
• Species: Arabidopsis thaliana
• Alignment Length: 636
• Identity: 127/636 - (19%)
• Similarity: 219/636 - (34%)
• Gaps: 225/636 - (35%)

  Fly    50 LIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGD---GKLVGCAFVQYETINQATKAILNSNGK 111
            |.|.::.:..|:..|.:.|||.||:..|.:.:  |   .:.:|..:|.:.....|.:||...|..
plant    38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCR--DLVTRRSLGYGYVNFTNPQDAARAIQELNYI 100

  Fly   112 ELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDESSGED 176
            .|.|:.:.|       .|..::|...........::..:|:.|.|.:.:..        .|.|..
plant   101 PLYGKPIRV-------MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTF--------SSFGNI 150

  Fly   177 SDAESGEDEEDSGESE-----DEENDEDHKENKDELKSK-LDIKNV-------KREKQISNDVQE 228
            ...:...|  .||:|:     ...|:|..::..::|... |:.|.|       ::|:..:.:..:
plant   151 VSCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTK 213

  Fly   229 GCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTE 293
            ...|::||:.....|.||:.|..::|.::.|::.:.. .|.|||..||.|   |:||...:|
plant   214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNF---ENADDAARA--- 271

  Fly   294 FKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRH 358
                .|.|:.|                |.||    :..|:.|                  ..|:.
plant   272 ----VESLNGH----------------KFDD----KEWYVGR------------------AQKKS 294

  Fly   359 ELE-QVKTQVLKNL----NRFVSRNRLSIHNLPQNYDNEKLKQMALTYTGFRPH----ECRVMRE 414
            |.| :::.:..:||    ::|.|.| |.:.||..:..:||||::      |.|.    ..:|||:
plant   295 ERETELRVRYEQNLKEAADKFQSSN-LYVKNLDPSISDEKLKEI------FSPFGTVTSSKVMRD 352

  Fly   415 HKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPI---VAFSIEDRAVH---- 472
                   |.|.|||.||::|.|.:.|..|:.:|:...    .:|:|:   :|...|||.|.
plant   353 -------PNGTSKGSGFVAFATPEEATEAMSQLSGKM----IESKPLYVAIAQRKEDRRVRLQAQ 406

  Fly   473 ----------------------------------------------------------------- 472
                                                                             
plant   407 FSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVP 471

  Fly   473 -------KIKEKR---------TERSKQNNPTYQNKQQERKE--RRQQKRNGQETKTPVPQADNK 519
                   :.:::|         .:.|:|.||..|.:...|..  |..|.|.|.....|....:|.
plant   472 SFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNM 536

  Fly   520 ------------------------SKLQKHIKKLEASRAAKAEGKVAEKKQ 546
                                    ..|...::::||..|||..|.:.|..|
plant   537 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQ 587

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4806	NP_611955.2	RRM	<2..>154	CDD:223796	23/106 (22%)
		RRM_SF	49..124	CDD:302621	20/76 (26%)
		RRM3_RBM28_like	230..306	CDD:240861	23/75 (31%)
		RRM4_RBM28_like	379..468	CDD:240862	27/95 (28%)
PAB2	NP_195137.5	PABP-1234	37..612	CDD:130689	127/636 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.010