DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and AT4G26650

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_567753.1 Gene:AT4G26650 / 828772 AraportID:AT4G26650 Length:455 Species:Arabidopsis thaliana


Alignment Length:385 Identity:69/385 - (17%)
Similarity:132/385 - (34%) Gaps:121/385 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILK-RGDGKLVGCAF 92
            ||      :|:|........:|.:..||:.:.|:.|:|:||::|.|.:..|:: |..|:..|..|
plant     2 NP------EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60

  Fly    93 VQYETINQATKAILNSNGKELL-GRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEK 156
            :.:...:.|.:.|::   |.:: ||.|....|:         |:|::        :|.:.:....
plant    61 IVFADPSVAERVIMD---KHIIDGRTVEAKKAV---------PRDDQ--------QVLKRHASPM 105

  Fly   157 EVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQ 221
            .:...|                                     |..|....::|           
plant   106 HLISPS-------------------------------------HGGNGGGARTK----------- 122

  Fly   222 ISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADL 286
                     .:|:..:|....:|:.:....:||.::..::.....:...:|..|:.|.::||.|:
plant   123 ---------KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 178

  Fly   287 CLQAGTEFKLMDEVLDPHPALSRE----------------------EMKSKQSQENKKDDAKDSR 329
            .|.. |..:|..::::...|:.:|                      ...|..|..|......::.
plant   179 VLHK-TFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNN 242

  Fly   330 NLYLA-REGLIMAGAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQN 388
            ||..| |...|.:|..|   .|:..:....||         |||.....|.|....:|.|
plant   243 NLGSAGRFSPIGSGRNA---FSSFGLGLNQEL---------NLNSNFDGNTLGYSRIPGN 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 21/76 (28%)
RRM3_Nop4p 229..312 CDD:410077 16/104 (15%)
RRM4_RBM28_like 379..468 CDD:409850 3/10 (30%)
PTZ00121 <473..>622 CDD:173412
AT4G26650NP_567753.1 RRM1_hnRNPA_hnRNPD_like 17..87 CDD:409763 21/72 (29%)
RRM2_Hrp1p 123..200 CDD:409767 15/77 (19%)
ser_rich_anae_1 <204..>385 CDD:468206 20/99 (20%)
Blue background indicates that the domain is not in the aligned region.

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