DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and AT3G47120

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_190296.1 Gene:AT3G47120 / 823865 AraportID:AT3G47120 Length:352 Species:Arabidopsis thaliana


Alignment Length:379 Identity:85/379 - (22%)
Similarity:134/379 - (35%) Gaps:103/379 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILK-RGDGKLVGCAFVQYETINQATKAIL 106
            :.|..|.:.|..|.:..||..|...|.|:|.:.||:::: :|.||..|.||:.||.......|:.
plant    31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVD 95

  Fly   107 NSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDE 171
            |.||..:|||.:.||       :.....|.||.||     |.:.:|.:.:.|     ....:..|
plant    96 NLNGALVLGRTIKVD-------HCGAYKKHEEEDE-----ETRRQNREARGV-----CRAFQRGE 143

  Fly   172 SSGEDSDAESGEDEEDS-----GESEDEENDEDHKENK-----------------DELKSKLDIK 214
            .:..|| .:...||:.:     |..||..:..||.:|:                 |..|...|.|
plant   144 CTRGDS-CKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSHDEK 207

  Fly   215 NV-------------KREKQISNDVQEGCTVFIKNVPF--DAEDADLRKACRKFGLVSYAIINRQ 264
            ..             |.::...|..::|.|.|.....|  |.|:...|                 
plant   208 RAATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFKPDVEEKSYR----------------- 255

  Fly   265 AVSGHSKGTA-FVKFKAKESADLCLQAGTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDS 328
               |...|.| :.:.|.:|..|            .|.:.|.   ||:....|:.:.:.:.|    
plant   256 ---GRGDGDASYGRPKERERVD------------REDMGPR---SRDAYDMKEQKRSGRYD---- 298

  Fly   329 RNLYLAREGLIMAGAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSI 382
             |.|..|....:...:...|..|.|..||      |.:..::.|....::|.|:
plant   299 -NAYSRRHNDEIDYVREDKGSRAQDWEKR------KAESRRDRNDREEKDRDSL 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 27/75 (36%)
RRM3_Nop4p 229..312 CDD:410077 17/85 (20%)
RRM4_RBM28_like 379..468 CDD:409850 2/4 (50%)
PTZ00121 <473..>622 CDD:173412
AT3G47120NP_190296.1 RRM_ist3_like 27..115 CDD:409845 29/90 (32%)
PABP-1234 38..>310 CDD:130689 74/329 (22%)
Blue background indicates that the domain is not in the aligned region.

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