Protein Alignment CG4806 and PAB6

DIOPT Version :9

• Sequence 1: NP_611955.2
• Gene: CG4806 / 37948
• FlyBaseID: FBgn0260456
• Length: 657
• Species: Drosophila melanogaster
• Sequence 2: NP_188259.1
• Gene: PAB6 / 820885
• AraportID: AT3G16380
• Length: 537
• Species: Arabidopsis thaliana
• Alignment Length: 616
• Identity: 110/616 - (17%)
• Similarity: 201/616 - (32%)
• Gaps: 241/616 - (39%)

  Fly    33 TQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYET 97
            :||....:.|.:...|.|.|:|:....|...|...|..:|::....:::. :|:..|..|||::|
plant    97 SQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDT 160

  Fly    98 INQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEES 162
            ...|..|....:|..:.|:|:||...:.|||..
plant   161 EQSAVSARSALHGSMVYGKKLFVAKFINKDERA-------------------------------- 193

  Fly   163 DAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQ 227
             |..|.:|.::
plant   194 -AMAGNQDSTN------------------------------------------------------ 203

  Fly   228 EGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKF-------KAKESAD 285
                |::||:.....|..|.....::|.||..::.|..: |.|:|..||.|       ||.||
plant   204 ----VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMES-- 261

  Fly   286 LC-LQAGTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGV 349
            || ||.|::...:.:.|                   |||:
plant   262 LCGLQLGSKKLFVGKAL-------------------KKDE------------------------- 282

  Fly   350 SASDMAKRHELEQVKTQVLKNLNRFVSR-----NRLSIHNLPQNYDNEKLKQMALTYTGFRPHEC 409
                  :|..|:|      |..:.|:::     :.|.:.||.::.:..:|:::...|.  :....
plant   283 ------RREMLKQ------KFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYG--QIVSA 333

  Fly   410 RVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKI 474
            :||.       |..|:||||||:.|...:.:..|.|.||.    |....:|||.         ::
plant   334 KVMC-------HENGRSKGFGFVCFSNCEESKQAKRYLNG----FLVDGKPIVV---------RV 378

  Fly   475 KEKRTERSKQNNPTYQNKQQERKE-----------------------------------RRQQKR 504
            .|::.:|.|:....:|.:.::..:                                   .:..:.
plant   379 AERKEDRIKRLQQYFQAQPRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGNQVPQM 443

  Fly   505 NGQET--------KTPVPQADNKSKLQKHIKKLEASRAAKA----EGKVAEKKQLSDVQGDFVGT 557
            :|.:.        |.|:.:..:...:.||.....|.|.||.    :|:|....:        ..|
plant   444 SGHQNITTYVPAGKVPLKERRSMHLVYKHPAYPVAKRGAKQTLVFKGEVNRNLE--------AAT 500

  Fly   558 AAKPGTSLKMRSKKKIVEQAKEHLKKVKTEK 588
            .:|..||.:.|.:::.:..:.:...:||.|:
plant   501 CSKATTSEENRKEERRLTLSGKLSPEVKVEE 531

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4806	NP_611955.2	RRM	<2..>154	CDD:223796	27/120 (23%)
		RRM_SF	49..124	CDD:302621	20/74 (27%)
		RRM3_RBM28_like	230..306	CDD:240861	25/83 (30%)
		RRM4_RBM28_like	379..468	CDD:240862	24/88 (27%)
PAB6	NP_188259.1	PABP-1234	22..477	CDD:130689	96/552 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910