DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment CG4806 and PAB4

DIOPT Version :9

Sequence 1:	NP_611955.2	Gene:	CG4806 / 37948	FlyBaseID:	FBgn0260456	Length:	657	Species:	Drosophila melanogaster
Sequence 2:	NP_179916.1	Gene:	PAB4 / 816867	AraportID:	AT2G23350	Length:	662	Species:	Arabidopsis thaliana

Alignment Length:	305	Identity:	79/305 - (25%)
Similarity:	132/305 - (43%)	Gaps:	38/305 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    39 EKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQATK 103
            :...|:.....|.|:|:.......:|.|.|...||:....:.....|:..|..|||::|.:.|..
plant   125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKN 189

  Fly   104 AILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEVGK 168
            ||...|||.|..:::||...|.|:|       .|...:|.....|..:|..|....:|.....|:
plant   190 AIEKLNGKVLNDKQIFVGPFLRKEE-------RESAADKMKFTNVYVKNLSEATTDDELKTTFGQ 247

  Fly   169 EDESSG----EDSDAESG-------EDEEDSGESEDEENDE--DHKE---NKDELKSKLDIKNVK 217
            ....|.    .|.|.:|.       |:.||:..:.:..|.:  |.||   .|.:.||:.:::..:
plant   248 YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSR 312

  Fly   218 REKQISND---VQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFK 279
            |.:|.|:|   ..:|..:::||:.....|..||:...:||.::...:.|.. ||.|||:.||.|.
plant   313 RYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFS 376

  Fly   280 AKESADLCLQAGTEFKLMDEVLDPHP-----ALSREEMKSK-QSQ 318
            |...|...|.     ::..:::...|     |..:||.::| |:|
plant   377 AASEASRVLN-----EMNGKMVGGKPLYVALAQRKEERRAKLQAQ 416

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG4806	NP_611955.2	RRM	<2..>154	CDD:223796	31/114 (27%)
		RRM_SF	49..124	CDD:302621	23/74 (31%)
		RRM3_RBM28_like	230..306	CDD:240861	20/80 (25%)
		RRM4_RBM28_like	379..468	CDD:240862
PAB4	NP_179916.1	PABP-1234	47..631	CDD:130689	79/305 (26%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010