DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and ncl

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001070120.3 Gene:ncl / 767714 ZFINID:ZDB-GENE-030131-6986 Length:704 Species:Danio rerio


Alignment Length:589 Identity:122/589 - (20%)
Similarity:203/589 - (34%) Gaps:175/589 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 DEYVSKNPKDEEPDEKKPKVEVK--------------EENGDEKE---VKEESDAEVGKEDESSG 174
            |:...::.::|.|..||.....|              ||:.||:|   .:||.|.....:.:.:|
Zfish   165 DDDDDESEEEEAPPPKKAAAAAKPAAKAPAAKEESDEEEDDDEEEDDSEEEEMDTTPAPKAKKAG 229

  Fly   175 -----EDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFI 234
                 |:|:.|..:||||..:.|:||......:.|.|.|.:   |.....|:...| .||.::|:
Zfish   230 MVKAKEESEEEDDDDEEDDDDEEEEETPATPAKRKAETKKE---KGTPPAKKAKTD-GEGFSLFL 290

  Fly   235 KNVPFDAEDADLRKACRKFGLVSYAIINRQAVS-GHSKGTAFVKFKAKESADLCLQAGTEFKLMD 298
            .|:..:.:..:|:.|..||  .|...:..|.|. |.:|...:|.|.::|.....|:...: ||:.
Zfish   291 GNLNNNKDFDELKSAISKF--FSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELNGK-KLLG 352

  Fly   299 EVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRHELEQV 363
            :.:....|.|:|     .||||||:  :|:|.|:                               
Zfish   353 QPVKLDKARSKE-----NSQENKKE--RDARTLF------------------------------- 379

  Fly   364 KTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKG 428
                              :.|||.:...:.|:::.......|            .|....|.|:|
Zfish   380 ------------------VKNLPYSITQDDLREIFDQAVDIR------------VPMGNTGTSRG 414

  Fly   429 FGFLSFDTHQRALAALRKLNNNPNIFGTQSRPIV---------------------------AFSI 466
            ..::.|.|...|..||.:...:    ..|.|.|:                           |||.
Zfish   415 IAYIEFKTEAIAEKALEEAQGS----DVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSA 475

  Fly   467 EDRAVHKIKEKRTE-RSKQNN---PTYQNKQQERKERRQQKRNGQETKTPVPQADNKSKLQKHIK 527
            .:.::..:.||... |..|||   ..|...:.|         |.:::|..:...:| :.::....
Zfish   476 SEDSLQSVFEKAVSIRIPQNNGRPKGYAFVEFE---------NVEDSKEALENCNN-TDIEGRSI 530

  Fly   528 KLEASRAAKAEG----------KVAEKKQLSD------VQGDFVGT-AAKPGTSLKMRSKKKIVE 575
            :||.|:..:..|          |....|.|||      ::..|.|. ||:..|.....|.|....
Zfish   531 RLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFDGAIAARIATDRDTGSSKGFGF 595

  Fly   576 QAKEHLKKVKTEKRKQKNKKIRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGG 640
            ...::.:..|..|....:.:|               .|.|...|..:|.....:....|.:||.|
Zfish   596 VDFDNEQDCKAAKEAMDDGEI---------------DGNKVTLDYAKPKGEGGRGGFGGGRGGFG 645

  Fly   641 VTGG 644
            ..||
Zfish   646 GRGG 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 21/83 (25%)
RRM4_RBM28_like 379..468 CDD:409850 20/115 (17%)
PTZ00121 <473..>622 CDD:173412 33/169 (20%)
nclNP_001070120.3 None
Blue background indicates that the domain is not in the aligned region.

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