DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and rbm8a

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001039147.1 Gene:rbm8a / 733972 XenbaseID:XB-GENE-6250837 Length:174 Species:Xenopus tropicalis


Alignment Length:139 Identity:40/139 - (28%)
Similarity:74/139 - (53%) Gaps:12/139 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KKMKSLKDDAAESQSQ---PETGVRKR-RNPFNT--QRLKEEKERRQKKRARLIVRNISYKSTED 62
            :.:..||:.|.:.:.:   .:.|.|.| |..:::  |...|...:|..:...|.|..:..::||:
 Frog    23 ESIHKLKEKAKKRKGRGFGADEGTRARIREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEE 87

  Fly    63 SLREHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGK 126
            .:.:.||::|.::::|: |.|..|.|.|.|.|:|||..:|..|:...||::|:|:.:.|||.   
 Frog    88 DIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWG--- 149

  Fly   127 DEYVSKNPK 135
              :|...||
 Frog   150 --FVRGPPK 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 27/75 (36%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
rbm8aNP_001039147.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..70 10/46 (22%)
RRM_RBM8 67..154 CDD:409762 29/91 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..174 5/15 (33%)
Blue background indicates that the domain is not in the aligned region.

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