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Protein Alignment CG4806 and Rbm28

DIOPT Version :10

Sequence 1:	NP_611955.2	Gene:	CG4806 / 37948	FlyBaseID:	FBgn0260456	Length:	657	Species:	Drosophila melanogaster
Sequence 2:	NP_598686.2	Gene:	Rbm28 / 68272	MGIID:	2655711	Length:	750	Species:	Mus musculus

Alignment Length:	714	Identity:	248/714 - (34%)
Similarity:	372/714 - (52%)	Gaps:	110/714 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 KSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQK---KRARLIVRNISYKSTEDSLREHF 68
            |.|::.:.|:        ||..|..:.:  ||.|.::.|   |:||||:||:|:|.:||.|:..|
Mouse    80 KKLRNKSKET--------RKNENAESPK--KEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVF 134

  Fly    69 GQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVS-- 131
            ..:||:.:|:|.|:.|||:.|.||||::.:.:|.||:..:|.||:.||.|.||||:.||:|..
Mouse   135 THYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQ 199

  Fly   132 -------KNPKDEEPDE---KKPKVEVKEENGDEKEVKEESDAEVGK------------------ 168
                   |...|.:|.|   |..:||.:.|:.|::|..:..|.|..:
Mouse   200 HASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHDDEEERESTIASPVSVHKRAVKRA 264

  Fly   169 ------EDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQ 227
                  |::.|.||||.|.|....|.|..:.|.:.|| :|::|...|:      |:::::.:||.
Mouse   265 APEESIEEDDSYEDSDLEEGGSSYDEGTVDSESSAED-QEDEDVPVSE------KKKRKLPSDVT 322

  Fly   228 EGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQA-- 290
            ||.||||:|:.||:|:..|.:..::||.:.|..:.....:.||||.||.:|..:|:|..||.|
Mouse   323 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 387

  Fly   291 ----GTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSA 351
                |...||....|....|::|:|....|:::.||...  :|||||||||||.||.|||:||||
Mouse   388 LEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTG--TRNLYLAREGLIRAGTKAAEGVSA 450

  Fly   352 SDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALTYT----GFRPHECRVM 412
            :|||||...|.:|.|.|||.|.|||:.||.:||||:..|:::|:::.|..|    |.|..|||||
Mouse   451 ADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEATRGEKGVRIKECRVM 515

  Fly   413 REHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEK 477
            |:.|......:|:|.|:.|..|..|:.||.|||..||||.|||:|.||||.||:|||...|:||.
Mouse   516 RDLKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPIVEFSLEDRRKLKVKEL 580

  Fly   478 RTERSKQNNPTYQNKQQERKERRQQKRNGQETKTPVPQA--DNKSKLQKHIK------------- 527
            |.:||.|.   .::|....|.:::||..|::.:..|.|:  .::||.....|
Mouse   581 RIQRSLQK---MESKPVTSKPQKEQKEVGKDKQQKVVQSATQDQSKAPGEQKGKAGSTSWSGFQT 642

  Fly   528 KLEASRAAKAEGKVAEKKQLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQK 592
            |.|..:....:||...|         .:...:..|..:::|.|.| |:.......|.:..:||||
Mouse   643 KAEVEQVELPDGKKRRK---------VLALPSHRGPKIRLRDKGK-VKSLPSRKPKPQMGQRKQK 697

  Fly   593 NKKIRESHLA-ERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGKIKKPKRTKWY 655
            .:::..|..| :|||.....:.|      ...|:.:||..:.|...|..:.       ||:||:
Mouse   698 KQQLASSVQAPKRKAKENKAEAR------FNQLVEQYKQKLLGPSKGAPLM-------KRSKWF 748

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.