DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and SNRNP70

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_003080.2 Gene:SNRNP70 / 6625 HGNCID:11150 Length:437 Species:Homo sapiens


Alignment Length:441 Identity:79/441 - (17%)
Similarity:147/441 - (33%) Gaps:176/441 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SQSQPETGVRKRRNPFNTQRLKEEKERRQKK--------------RAR------LIVRNISYKST 60
            ::::.|...||||         |:.||||::              .|:      |.|..::|.:|
Human    60 AETREERMERKRR---------EKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTT 115

  Fly    61 EDSLREHFGQWGTLEDVH-ILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWAL 124
            |..||..|..:|.::.:| :..:..||..|.||::||.......|..:::||::.||:|.||...
Human   116 ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180

  Fly   125 GK-------------------------------------DEYVSKNP---KDEEPDEKKPKVEVK 149
            |:                                     ||....:|   :|.:.|.::.:.|..
Human   181 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERS 245

  Fly   150 EENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIK 214
            .|...|:|.:.....:..:...|          .|:|:...|.:...|:|....:...:|:   :
Human   246 RERDKERERRRSRSRDRRRRSRS----------RDKEERRRSRERSKDKDRDRKRRSSRSR---E 297

  Fly   215 NVKREKQISNDVQEGCTVFIKNVPFDAEDA---------------------------DLRKACRK 252
            ..:||::...:::.|.....:  |.:|.||                           :.|::.|.
Human   298 RARRERERKEELRGGGGDMAE--PSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 360

  Fly   253 FGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEVLDPHPALSREEMKSKQS 317
                                    :.:.:...|           .|...|      ||..:.::.
Human   361 ------------------------ERERRRDRD-----------RDRDRD------REHKRGERG 384

  Fly   318 QENKKDDAK---------------DSRNLYLAREGLIMAGAKAADGVSASD 353
            .|..:|:|:               |||::|:..||        .||..|.:
Human   385 SERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEG--------GDGYLAPE 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 25/81 (31%)
RRM3_Nop4p 229..312 CDD:410077 12/109 (11%)
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
SNRNP70NP_003080.2 U1snRNP70_N 3..94 CDD:432406 10/42 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..79 8/27 (30%)
Required for interaction with U1 RNA. /evidence=ECO:0000269|PubMed:2467746 92..202 27/109 (25%)
RRM_snRNP70 102..187 CDD:409682 26/84 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..437 42/305 (14%)
Blue background indicates that the domain is not in the aligned region.

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