DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and cirbp

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001017228.1 Gene:cirbp / 549982 XenbaseID:XB-GENE-492781 Length:166 Species:Xenopus tropicalis


Alignment Length:79 Identity:27/79 - (34%)
Similarity:48/79 - (60%) Gaps:2/79 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLV-GCAFVQYETINQATKAILNSNGKE 112
            :|.|..:::::||:||.:.|.::|.:.:|.::|..:.|.. |..||.:|....|..|::..|||.
 Frog     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKS 71

  Fly   113 LLGRKVFVDWALGK 126
            :.||::.||.| ||
 Frog    72 VDGRQIRVDQA-GK 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 24/75 (32%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
cirbpNP_001017228.1 RRM_CIRBP_RBM3 6..85 CDD:409883 27/79 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..166 10/18 (56%)
Blue background indicates that the domain is not in the aligned region.

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