DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4806 and NCL

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_005372.2 Gene:NCL / 4691 HGNCID:7667 Length:710 Species:Homo sapiens


Alignment Length:460 Identity:97/460 - (21%)
Similarity:173/460 - (37%) Gaps:96/460 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 DEYVSKNPKDEEPDEKKPKVEVKEENGDE---------KEVKEESDAEVGKEDESSGEDSDAESG 182
            ||....:..|||.|.::..:|.....|.:         |.|.|:.|.|...|||...:|.|.|..
Human   192 DEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDD 256

  Fly   183 EDEEDSGESEDEENDEDHKE----NKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAED 243
            :||:|. |.|:||.:|..||    .|.|:..:......|::|....:......:|:.|:.|:...
Human   257 DDEDDE-EEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSA 320

  Fly   244 ADLRKACRKFGLVSYAIINRQAV----SGHSKGTAFVKFKAKESADLCLQA------GTEFKL-- 296
            .:|     |.|:......|..||    .|.::...:|.|::.|..:..|:.      |.|.||  
Human   321 PEL-----KTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 380

  Fly   297 -----MDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAK 356
                 ..:..|....|:: .:..|.:|:..|:..:|:..:.|..:.....|....:..:.:|..|
Human   381 PKGKDSKKERDARTLLAK-NLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEK 444

  Fly   357 RHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNE------------KLKQMALTYTGFRPHEC 409
            ..| |:..|:        :....:|::...:...|:            :.|.:.|:...:...| 
Human   445 TFE-EKQGTE--------IDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATE- 499

  Fly   410 RVMRE--HKVT----PEHPQGKSKGFGFLSFDTHQRALAALRKLN-----------------NNP 451
            ..::|  .|.|    |::..|||||:.|:.|.:.:.|..||...|                 .:|
Human   500 ETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 564

  Fly   452 NIFGTQSRPIVAFSI-EDRAVHKIKE-------------KRTERSKQNNPTYQNKQQERKERRQQ 502
            |.....|:.:....: ||.....:||             :.|..||.......|.:::.|..::.
Human   565 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 629

  Fly   503 KRNGQ 507
            ..:|:
Human   630 MEDGE 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848
RRM3_Nop4p 229..312 CDD:410077 20/99 (20%)
RRM4_RBM28_like 379..468 CDD:409850 23/124 (19%)
PTZ00121 <473..>622 CDD:173412 8/48 (17%)
NCLNP_005372.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..303 33/111 (30%)
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 307..381 CDD:409837 18/78 (23%)
RRM2_NCL 390..465 CDD:409838 14/84 (17%)
RRM3_NCL 485..557 CDD:409839 18/72 (25%)
RRM4_NCL 572..649 CDD:409840 10/63 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..710
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.