DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and tra2a

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_012819962.1 Gene:tra2a / 448073 XenbaseID:XB-GENE-492325 Length:341 Species:Xenopus tropicalis


Alignment Length:57 Identity:15/57 - (26%)
Similarity:26/57 - (45%) Gaps:11/57 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 TLVKQKNVSADENSESTILGLSDARSMEGLGETDKALVQKIDKF----LKTHTISFD 136
            |:..:::::...|::...|       ||...|..:.|:|.|.||    |:.|.|..|
 Frog   100 TVAVEESIAHHYNNQIRTL-------MEEDPEKYEELLQLIKKFRDEELEHHDIGLD 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 8/39 (21%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
tra2aXP_012819962.1 RRM_TRA2A 110..193 CDD:410047 14/47 (30%)
Blue background indicates that the domain is not in the aligned region.

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