DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and Pof

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_523851.1 Gene:Pof / 37947 FlyBaseID:FBgn0035047 Length:495 Species:Drosophila melanogaster


Alignment Length:382 Identity:78/382 - (20%)
Similarity:131/382 - (34%) Gaps:121/382 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 TG-VRKRRNPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDG 85
            || :|....||:     :|::........|.|.||.:..|..:::.:|.. ....|:.:|||  .
  Fly   193 TGHLRAELKPFS-----DEEQAEFIDPCSLYVGNIPFNMTTSAIKAYFAN-AMRVDIGVLKR--E 249

  Fly    86 KLVGCAFVQYETINQATKAI-------LNSNGKELLGRKV-------FVDWALGKDEYVSKNPKD 136
            |....|||:|.:.:|..:|.       |||....:..|::       .|..|.......|.|..|
  Fly   250 KRARYAFVRYASPDQTMEAFKELVDSPLNSRTLTVRYRRLRKRAGMPMVQCATSFQALQSPNGDD 314

  Fly   137 EEPDEK---KPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDE 198
            :..|.|   .|.:|                 .:...|..:..||   ||..:||.          
  Fly   315 DNTDCKVISPPPLE-----------------SIIISDSDNCSDS---SGNGKEDG---------- 349

  Fly   199 DHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINR 263
                              ||:|:|:..              :.|...|::...::|.:..::..|
  Fly   350 ------------------KRKKKINEQ--------------EREIEKLKRQMAEYGAIIKSLQFR 382

  Fly   264 QAVSGHSKGTAFV-----KFKAKESADLCLQAGTEFKLMDEVL---------DPHPALSREEMKS 314
            |    :|....|:     |.:...:...||.......||.::.         ||.||..    .:
  Fly   383 Q----NSLEDTFIPDLTPKVEPSVNPTGCLLGSNAVHLMRDIKKECDYLGIPDPVPATK----PT 439

  Fly   315 KQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRHE----LEQVKTQV 367
            .|:|::.:..||  |:.:    |.:..| ....|.||...|..:|    ||::..|:
  Fly   440 TQAQDDSQKKAK--RSCF----GRLFTG-PFRRGTSAMKTADEYEKDDRLEELYAQL 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 22/88 (25%)
RRM3_Nop4p 229..312 CDD:410077 16/96 (17%)
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
PofNP_523851.1 RRM_SF 217..285 CDD:409669 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.

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