DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and pAbp

DIOPT Version :9

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster


Alignment Length:642 Identity:133/642 - (20%)
Similarity:221/642 - (34%) Gaps:223/642 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RRNPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCA 91
            |..|......:.:...|:.....:.::|:.......::.:.|..:|.:....:.....|...|..
  Fly    69 RNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133

  Fly    92 FVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEK 156
            ||.:||...|..:|...||..|.|:||:|    ||  ::   |:.|.                ||
  Fly   134 FVHFETEEAANTSIDKVNGMLLNGKKVYV----GK--FI---PRKER----------------EK 173

  Fly   157 EVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQ 221
            |:.|                                               |:||          
  Fly   174 ELGE-----------------------------------------------KAKL---------- 181

  Fly   222 ISNDVQEGCTVFIKNVPFDAEDADLRKACRKFG-LVSYAIINRQAVSGHSKGTAFVKFKAKESAD 285
            .:|       |::||...|.:|..|::....:| :.||.:::::  .|.|||..||.|:..|:|:
  Fly   182 FTN-------VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKE--DGKSKGFGFVAFETTEAAE 237

  Fly   286 LCLQAGTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVS 350
            ..:|| ...|.|.|....:  ::|.:.|:::.||.|:                            
  Fly   238 AAVQA-LNGKDMGEGKSLY--VARAQKKAERQQELKR---------------------------- 271

  Fly   351 ASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMALTYTGFRPH----ECRV 411
                 |..||:|.:.:.:..:|.:|.       ||....|:::|:      ..|.|:    ..:|
  Fly   272 -----KFEELKQKRHESVFGVNLYVK-------NLDDTIDDDRLR------IAFSPYGNITSAKV 318

  Fly   412 MREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLNNNPNIFGTQSRPI---VAFSIEDRAVH- 472
            |.:.       :|:||||||:.|:....|..|:.:||.  .:.|  |:|:   :|...|:|..| 
  Fly   319 MTDE-------EGRSKGFGFVCFNAASEATCAVTELNG--RVVG--SKPLYVALAQRKEERKAHL 372

  Fly   473 ---KIKEKRTERSKQNNPTYQ--------------NKQQERKERRQQKRNGQETKTP--VPQADN 518
               .::.....|.:|....||              |::....:...|.||     ||  |||...
  Fly   373 ASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRN-----TPRWVPQVRP 432

  Fly   519 KSKLQKHIKKLEASRAAKAEGKVAEKKQLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKK 583
            .:.:|    .::|..||               .|.|.|||....|  :.||.......|:     
  Fly   433 PAAIQ----GVQAGAAA---------------AGGFQGTAGAVPT--QFRSAAAGARGAQ----- 471

  Fly   584 VKTEKRKQKNKKIRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGG 640
                      .:::.:|.|...|||....|.:..|.......|.   .|.|.|..||
  Fly   472 ----------PQVQGTHAAAAAANNMRNTGARAITGQQTAAPNM---QIPGAQIAGG 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM <2..>154 CDD:223796 25/126 (20%)
RRM_SF 49..124 CDD:302621 18/74 (24%)
RRM3_RBM28_like 230..306 CDD:240861 23/76 (30%)
RRM4_RBM28_like 379..468 CDD:240862 24/95 (25%)
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 133/642 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24012
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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