DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4806 and Rbmx2

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001107258.2 Gene:Rbmx2 / 367930 RGDID:1562693 Length:328 Species:Rattus norvegicus


Alignment Length:349 Identity:73/349 - (20%)
Similarity:125/349 - (35%) Gaps:70/349 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NPFNTQRLKEEKERRQ---------------KKRARLIVRNISYKSTEDSLREHFGQWGTLEDVH 78
            ||....:|..|...|:               |..|.:.:..:.|:.||..:...|.|:|.:.:::
  Rat     2 NPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNIN 66

  Fly    79 ILK-RGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDW-----ALGKDEYV------- 130
            ::: :..||..|..|:.||.......|:.|.||.::.||.:.||.     |..:.|.|       
  Rat    67 LVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVTREL 131

  Fly   131 ------SKNPKDEEP----DE-----KKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAE 180
                  :|.|....|    ||     ||||.:.||:.  :|:.||:::..|..|..|....... 
  Rat   132 QEKGCGAKTPPSSPPEVSEDEDAKVTKKPKKDKKEKK--KKKEKEKTERPVQAELPSCSRSKTV- 193

  Fly   181 SGEDEEDSGESEDEENDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDA- 244
                     :..||::.:.|.....|...|.:.:..|:....|.|.:..|....:...::|:.. 
  Rat   194 ---------KETDEQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEK 249

  Fly   245 ---DLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFKLMDEVLDPHPA 306
               :.:.:.|:.|...    :|....|.|.||...:......       |...:.........|.
  Rat   250 HKHEHKPSSRREGEEK----SRDKDRGRSSGTHSSRHHGHSE-------GRSHRSRSRSRSRSPD 303

  Fly   307 LSREEMKSKQSQENKKDDAKDSRN 330
            .|....|.:.|.|.:...|.|.|:
  Rat   304 RSHRHKKHRYSHERESFHASDRRH 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 20/80 (25%)
RRM3_Nop4p 229..312 CDD:410077 12/86 (14%)
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
Rbmx2NP_001107258.2 RRM_ist3_like 27..115 CDD:409845 22/87 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..328 45/233 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.