DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and tsu

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster


Alignment Length:144 Identity:40/144 - (27%)
Similarity:71/144 - (49%) Gaps:15/144 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LKDDAAESQSQ---PETGVRKRRNPFNTQRLKEEKE-----RRQKKRARLIVRNISYKSTEDSLR 65
            ||:.|...:.:   .::..|:..:.:...|.:::.|     :|..:...|.|.:|..::.||.::
  Fly    26 LKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90

  Fly    66 EHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEY 129
            |.|..:|.::::|: |.|..|...|.|.|:|||..||..|....||.|::|:.:.|||..     
  Fly    91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF----- 150

  Fly   130 VSKNPKDEEPDEKK 143
             .|.||..:..||:
  Fly   151 -VKGPKRVKKSEKR 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 28/75 (37%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 9/53 (17%)
RRM_RBM8 67..154 CDD:409762 30/92 (33%)
Blue background indicates that the domain is not in the aligned region.

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