DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and Caper

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:84 Identity:19/84 - (22%)
Similarity:38/84 - (45%) Gaps:18/84 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 KQKAVTSISRAIDSDSIQLVDGVT-----LVKQKNVS-----ADENS------ESTILGLSDARS 109
            :.:||..||..:|:..:|.|.|::     ..||.:::     |.:|:      |..|:...|.| 
  Fly    50 QDEAVERISAELDNSKLQEVMGISGFGRKQAKQFDINEMIQKAKQNAPKAAVDEKAIIDPDDER- 113

  Fly   110 MEGLGETDKALVQKIDKFL 128
             :|..:.|....::.|:.:
  Fly   114 -KGKDDDDDDEEEEEDEMI 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 18/78 (23%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
CaperNP_609095.1 SF-CC1 213..578 CDD:273721
Blue background indicates that the domain is not in the aligned region.

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