DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and CG33228

DIOPT Version :9

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001286854.1 Gene:CG33228 / 2768732 FlyBaseID:FBgn0261373 Length:215 Species:Drosophila melanogaster


Alignment Length:29 Identity:10/29 - (34%)
Similarity:16/29 - (55%) Gaps:4/29 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 YKSTEDSLREHFGQW--GTLEDVHILKRG 83
            |||:|..:..:..|.  ||::  |..:||
  Fly   142 YKSSEKYVAVYGSQLPIGTVK--HYFERG 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM <2..>154 CDD:223796 10/29 (34%)
RRM_SF 49..124 CDD:302621 10/29 (34%)
RRM3_RBM28_like 230..306 CDD:240861
RRM4_RBM28_like 379..468 CDD:240862
CG33228NP_001286854.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0127
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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