DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and hrb1

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_594207.3 Gene:hrb1 / 2542567 PomBaseID:SPAC328.05 Length:464 Species:Schizosaccharomyces pombe


Alignment Length:450 Identity:92/450 - (20%)
Similarity:159/450 - (35%) Gaps:137/450 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFGQW 71
            :.|..|...::..|..|        |.|:..:::.       |:.|.|:||:.....|:|..||.
pombe    51 RGLHFDGEHTERDPHLG--------NGQKYTQQER-------RVYVGNLSYQVRWFELKEFMGQV 100

  Fly    72 GTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKD 136
            |.:.:..||...:|...|||.::|.|..:|..||...:.::.:||.|:                 
pombe   101 GNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVY----------------- 148

  Fly   137 EEPDEKKPKVEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEENDEDHK 201
                       ::|:        .|.:|..|   .||...|.:.:|:|.|.              
pombe   149 -----------IRED--------REQNARFG---SSSVSPSASSNGKDSEP-------------- 177

  Fly   202 ENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAV 266
                             ::|:          |:.|:|::....||:...|:.|.|..|.|.... 
pombe   178 -----------------DRQL----------FVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ- 214

  Fly   267 SGHSKGTAFVKFKAKESADLCLQA--GTEF--KLMDEVLDPHPALSREEMKSKQSQEN----KKD 323
            .|.|:|...|...:.:.|...:|.  .|:|  :.::..||   ..:..:.|...:..|    ..:
pombe   215 EGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLD---RFAHHKSKPYSTHGNGYTFPAE 276

  Fly   324 DAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQN 388
            ....:.:.||.     |.||..                ||:..|..........:.:.:.|||..
pombe   277 MQMTTSSTYLP-----MLGANT----------------QVEDLVYHAYPHGPCSDCIYVGNLPWA 320

  Fly   389 YDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALRKLN 448
            ..:..|..: .|..|      .|:|. ::..| |.|:|||||.:.|:....|.:::.|||
pombe   321 TSDRNLLDL-FTDIG------SVIRA-RIAYE-PTGRSKGFGVVQFENENDAASSIEKLN 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 24/74 (32%)
RRM3_Nop4p 229..312 CDD:410077 20/86 (23%)
RRM4_RBM28_like 379..468 CDD:409850 20/69 (29%)
PTZ00121 <473..>622 CDD:173412
hrb1NP_594207.3 PABP-1234 62..>385 CDD:130689 89/438 (20%)
Blue background indicates that the domain is not in the aligned region.

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