DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and rbm8

DIOPT Version :10

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_594439.1 Gene:rbm8 / 2541998 PomBaseID:SPAC23A1.09 Length:121 Species:Schizosaccharomyces pombe


Alignment Length:118 Identity:31/118 - (26%)
Similarity:58/118 - (49%) Gaps:14/118 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 LIVRNISYKSTEDSLREHFGQWGTLEDVHI-LKRGDGKLVGCAFVQYETINQATKAILNSNGKEL 113
            :||..:..::||:.:.:.|..:|.::::|: |.|..|.:.|.|.::|.|:.||.||:...| ..|
pombe    12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKN-LSL 75

  Fly   114 LGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENGDEKEVKEESDAEV 166
            |..|:.||:|.            .||.|:.|:..:...:..:....:..|.:|
pombe    76 LDEKLEVDFAF------------LEPPERAPRPSISTRSRSQSPEVQHRDRDV 116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM2_RBM28_like 49..124 CDD:409848 24/74 (32%)
RRM3_Nop4p 229..312 CDD:410077
RRM4_RBM28_like 379..468 CDD:409850
PTZ00121 <473..>622 CDD:173412
rbm8NP_594439.1 RRM_RBM8 4..90 CDD:409762 26/90 (29%)
Blue background indicates that the domain is not in the aligned region.

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