DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4806 and SPBC4F6.14

DIOPT Version :9

Sequence 1:NP_611955.2 Gene:CG4806 / 37948 FlyBaseID:FBgn0260456 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_596114.1 Gene:SPBC4F6.14 / 2540871 PomBaseID:SPBC4F6.14 Length:674 Species:Schizosaccharomyces pombe


Alignment Length:644 Identity:168/644 - (26%)
Similarity:280/644 - (43%) Gaps:151/644 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RKRRNPFNTQRLKEEKERRQKKRARLIVRNISYK-STEDSLREHFGQWGTLEDVHILKRGDGKLV 88
            |||......|....:|..||..|.|||:||:.:. .....|..||.::|.:.::.|..:|.|::.
pombe    84 RKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMC 148

  Fly    89 GCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPKVEVKEENG 153
            |.|||..:....|.:|:.:.||.|:.||.:.||||:.||.:.:...||...:|     |.||...
pombe   149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEE-----ENKEFVS 208

  Fly   154 DEKE--VKEESDAEVGKEDESSGEDSDAE-SGEDEEDSGESEDEENDEDHKENKDELKSKLDIKN 215
            ||..  |.|::.|:...|:|..|.....| :||.||:....:|.|:..|...:|:.:..::    
pombe   209 DEGHSIVTEDASADSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEI---- 269

  Fly   216 VKREKQISNDVQEGCTVFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKA 280
              |:.:...|     |||::|:.|:..:.:|....|:||.::||.:.:...:..|.|..|:||:.
pombe   270 --RDNEGLED-----TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRY 327

  Fly   281 KESADLCLQAGTEFK---------------LMDEVLDPH----------------PALSREE--- 311
            ::....||:..::..               |:||.:|..                .|::|:|   
pombe   328 EKDCQNCLEMASQLPTQEPTEAEKRFLPSVLVDEGIDTDSVSSRFLLHGRLLKVTSAVTRKEASD 392

  Fly   312 --MKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKAADGVSASDMAKRHE-LEQVKTQVLKNLNR 373
              .||.|.::.|.....|.|:|:|..||.|.|.....:.:|.:|...|.: :.|.|..:.||...
pombe   393 INQKSLQERKQKMGKGVDRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTL 457

  Fly   374 FVSRNRLSIHNLPQNYDNEKLKQMA-LTYTGF--------------------RPHECR------V 411
            .:|.|||||.|:.::.|.:.|..:. ....||                    :.|..:      |
pombe   458 HLSLNRLSIRNISRHIDPKILAMLGRQAIRGFMDDVSKGLRANITEEEENLDKGHRLKRGKSGGV 522

  Fly   412 MREHKV-TPEHPQGKSKGFGFLSFDTHQRALAALRKLNNN------------------------- 450
            :::.|| |.:...|:||||||:.|.:|:.||.|||.||..                         
pombe   523 LKQAKVETEKAGAGRSKGFGFMQFISHKYALMALRWLNGREITVKKIIDAEIEWARKHKIPEPQL 587

  Fly   451 PNIFGTQSRP---IVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQERKERRQQKRNGQETKTP 512
            ||| ....||   ||.|:||:..|.|.::::.:..:|.  ..|.||||.::..::||:..:.:  
pombe   588 PNI-DYNDRPRRLIVEFAIENIQVVKRRQEKEKSFRQK--AKQLKQQEDEDNLKRKRSESDVE-- 647

  Fly   513 VPQADNKSKLQKHIKKLEASRAAKAEGKVAEKKQLSDVQGDFVGTAAKPGTSLKMRSKK 571
                ||::|          .:.||. .::.::|:                  :|.||:|
pombe   648 ----DNEAK----------EKQAKV-ARIIQRKR------------------MKRRSRK 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4806NP_611955.2 RRM <2..>154 CDD:223796 43/129 (33%)
RRM_SF 49..124 CDD:302621 26/75 (35%)
RRM3_RBM28_like 230..306 CDD:240861 22/106 (21%)
RRM4_RBM28_like 379..468 CDD:240862 39/144 (27%)
SPBC4F6.14NP_596114.1 RRM1_Nop4p 6..84 CDD:241118 168/644 (26%)
RRM2_Nop4p 107..189 CDD:241119 29/81 (36%)
RRM3_RBM28_like 278..384 CDD:240861 22/105 (21%)
RRM4_Nop4p 458..614 CDD:241121 44/156 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0127
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 171 1.000 Inparanoid score I1185
OMA 1 1.010 - - QHG55464
OrthoFinder 1 1.000 - - FOG0003903
OrthoInspector 1 1.000 - - oto101117
orthoMCL 1 0.900 - - OOG6_102701
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1976
SonicParanoid 1 1.000 - - X2687
TreeFam 1 0.960 - -
1110.760

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